Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014299.1 Kokia drynarioides strain JFW-HI SEQ_129335, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25663
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Warning! 50 characters in sequence are not A, C, G, or T
Found at i:860 original size:216 final size:216
Alignment explanation
Indices: 167--16448 Score: 14400
Period size: 216 Copynumber: 75.5 Consensus size: 216
157 TGAAACTTTC
** ** *
167 GAACTTGTTGAACTTTTACGAGTTCTTTTATTAACTT-TGATTCCTTAACTTATTCAAGACAATC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTA-TAACTTCTG-TTCCTTAAAGTATTCAAGACGATC
* * * *
231 CAATCCTTTGAGAAAATTTTCGAACATTCCATGCTCGGGAAATCGCATCATTCGGTCTAAATAGT
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * *
296 TTTTCATTTTGTGAAACAAG-TTTGGTCTTTGAATTTAAAACTTATTTATGTAAGAATTGTTTCT
129 TTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
*
360 CTCTTGGATCTT-G--G-A---C-
193 CTCTTGGTTCTTGGACGAACTTCT
* * * * * * * *
376 GAACTTGTCGAATTTTTACGAGTTCTTCTATAACTTCGGTTACTTAATGTATTAAAGACGATCAA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * ** * * *
441 ATCCTTTGAGCAATTTTCCGAACATTCCATGCGAGAGAAATCGCATCATTTGGCCT-AGTAGTTT
66 TTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* *
505 TTCAATTTT-TAAACAAGTTTTGATCTTTGAATT-AAAACTTATTTACATAAGTTTACATGAGAA
131 GTC-ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC----G------TGAGAA
* *
568 TTGTGTCTCTCTTGGTTCTTGAACGAACTTCT
185 TTGTTTCTCTCTTGGTTCTTGGACGAACTTCT
* * *
600 GAACTTGTCGAACTTTTATGAGTTCTTTTATAACTAT-GGTTCCTTAAAGTATTCAAGACGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACT-TCTGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * * *
664 AATCCTTTGAGCAATTTTCCGAACATTCCATGCTTGGGAAGTTGCATCAATTGGTCCAAAAAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * *
729 TGTCATTTTGAAAACAAGTTTTGGTCTTTTAATTAAAAACTTATTTACGTGAGAATTGTTTCTTT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * *
794 CTTGGTTGTTGGGCGAACTTTT
195 CTTGGTTCTTGGACGAACTTCT
* * *
816 GAACTTGTCAAACTTTTATGAGTTCTTTTTTAACTTCTGTTCCTTAAAGTATTCAAGA-TAGTCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGA-TCC
* * * *
880 ATTCCTTTTAGTAGTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTCGGTCTAAATAGCT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-T
* * *
945 TT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATAGATTCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* *
1009 TCTTGGTTCTTAGACGAACTTTT
194 TCTTGGTTCTTGGACGAACTTCT
** * * * * * * *
1032 GAAAATGACTAACTTTT-CGAGTTCTTTTACAACTTCGGTTCCTTTACGTA-TCTAACACGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTC-AAGACGATCC
* * * * ** *
1095 AATCCTTTGAGCAATTTTTTGCACATTACATGCGAGGGAAATTGCATCATTTGGTCTAAATAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * *
1160 TTTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
*
1225 CTTGGTTCTTGGATGAACTT-T
195 CTTGGTTCTTGGACGAACTTCT
* * * *
1246 CGAACATGTCGAACTTTTACTAGTTCTTTTTTAACTT-TGGTTCCTTAAAGTATTCAAGACGATC
1 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTTCCTTAAAGTATTCAAGACGATC
* * * * * * * *
1310 CAATCCTTCGAGCAATTTTACAAACATTTCATGCTCGGGAAGTAGCATCATTTGGTCTAAAAAGT
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * *
1375 TTGTCATTTTGTAAACAAGTTTTGG-CATTTG-ATAAAAAACTTAATTACGTAAG-ATTCGTTTC
129 TTGTCATTTTGTAAACAAGTTTTGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATT-GTTTC
* * * *
1437 TCACTTAGTTCGTGGACGAACTTCC
192 TCTCTTGGTTCTTGGACGAACTTCT
* * * * * * * *
1462 GAACTTGTCAAACTTTGACAAGTTTTTTTTTAAC-TCCGATTCCTTAAAGTGTTCAAGACAATCT
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATCC
* * * * * * * **
1526 ATTCCTTTAAGTAATTTTCCAAACATTCCACGCTCGAGAAATCTCATCATTTTTTCTAAATAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * *
1591 TTTCATTTTGTAAA-AATGTTTTGGTCTTTAAATTAAAAACTTGTTTACATGAGAATTGTTTCTC
130 TGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
*
1655 TCTTGGTTCTAGGACGAAC-TCT
194 TCTTGGTTCTTGGACGAACTTCT
* * * * * * *
1677 CGAAATTGACAAACTTTTATGAGTACTTTTATAACTTCGGTTCATTAAAGTATTCAAGATGATCC
1 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCC
* * * * *
1742 ATTGCTTCT-AGCAGTTTTTCGAACATTCCATTCTCGAGG-AATCGTATCATTTCGTCTAAATAG
65 ATTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCG-GGAAATCGCATCATTTGGTCTAAATAG
* * * ** * *
1805 TTTGTCATTTTGTATACAAGTTTTAGTCTTTGAATTAAAAACTTTTTTATTTGAGAATTATTTCG
128 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
*
1870 CTCGTGGTTCTTGGACGAACTT-T
193 CTCTTGGTTCTTGGACGAACTTCT
* *
1893 CGAACTTGTTAAACTTTGCTA--AGTTCTTTTATAACTT-TGATTCCTTAAAGTATTCAAGATGA
1 -GAACTTGTCAAACTTT--TACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGA
* * * ** ** *
1955 TCCACTCCTTCGAGCAATTTTCCGAACATTCCACACTCGGGAAATCAAATCATTCGGTCTAAATA
62 TCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* * *
2020 GTTTCTCATTTTGCAAACAAGTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTTTC
127 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* *
2085 TCTATTGGTTCATGGACGAACTTCT
192 TCTCTTGGTTCTTGGACGAACTTCT
* * * * **
2110 GATCCTGT-AGAAATTTTACGACTTCTTTTATAACTTCTGTTCCTTAGAA-TATTCAAGATTATC
1 GAACTTGTCA-AACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTA-AAGTATTCAAGACGATC
* * *
2173 CATT-CTTTCGAGCAATTTTTCTAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAACA-
64 CATTCCTTT-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* * * *
2236 TATTGTCATTTTTTAAACAAGTTTTAGCCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTC
128 T-TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
*
2301 TCTCTTGGTTCTTGGACAAACTT-T
192 TCTCTTGGTTCTTGGACGAACTTCT
* * * * *
2325 CGAACTTGTCAAACTTTTATGAGTTCTTTTATATCTT-TGGATCCTTCAAGTCTTCAAGACGATC
1 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTTCCTTAAAGTATTCAAGACGATC
* * *
2389 CATTCCTTCT-AGCAATTTTTCGAATATTCCATGCTTGGGAAATCGCATCATTCGGTCTAACAT-
64 CATTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA-ATA
* * * *
2452 -TTTGT-A---T-T---CAAGTTTTGGTGTTTGTATTAAGAACTTATTTATGTGAGAATTGTTTC
127 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * *
2508 TGT-TATTGTTCGTGGATGAACTT-T
192 TCTCT-TGGTTCTTGGACGAACTTCT
* * * * * * * *
2532 CAAACTTCTCAAAATTTTACAAGTTCTTTTTTAATTTCGGTTCCTTAAAGTATTCAAGACGGTCC
1 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCC
* * * * * *
2597 ATTCCTTTTAGTAGTTTTTCGAACATTCCATGCTCAGGAAATCGAATCATTCGGTCTAAATAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* **
2662 T-TCCATTTTGTAAATAAGTTTTGGTCTTTGAATTAAAAACTTATTTATTTGAGAATTGTTTCTC
130 TGT-CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * *
2726 TCTTGGTTTTTGGATGAACTTCC
194 TCTTGGTTCTTGGACGAACTTCT
* * * * * *
2749 GAACTTGTTAAACTTTTACGAGTTATTTTTTAACTTCGGTTCCTTAAAGTACTCAAGACGGTCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * *
2814 TTCCTTTTAGTAGTTTTTCGAACATTCCATGCTCTGGAAATCGCATCA------CTAAATAGTTT
66 TTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
2873 TTCATTTTATAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
131 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
*
2938 TTGGTTGTTGG-CTGAACATTC-
196 TTGGTTCTTGGAC-GAAC-TTCT
* * * * * *
2959 AAACTTGTTAAACTTATACGAGTTCCTTTT-TAACTTCGGTTCCTTAAAGTGTTC-AGACGATCT
1 GAACTTGTCAAACTTTTACGAGTT-CTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCC
* * * *
3022 ATTCCTTCGAGCAATTTTTCGAACATTCCATG-TGAGGGAAATCGGATCATTTGGTTTAAATAGT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCT-CGGGAAATCGCATCATTTGGTCTAAATAGT
* * * * *
3086 TTTTCATTTTGTAAACAACTTTTGATCTTTGAATTAAAAACTTATTTATGTGAGAATTGTGTCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
*
3151 TCTTTGTTCTTGGACGAACTTCT
194 TCTTGGTTCTTGGACGAACTTCT
* * * *
3174 GAAATTGTCGAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* ** * * * * * *
3239 ATCCTTAAAGAAATTTTTCGAACATTCCATGCTTGGGAAGTCGCATCATCTGCTCTAAAAAGTTT
66 TTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
3304 GTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAGAAACTTATTTACGTGAGAATCGTTTCTCTA
131 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * *
3369 TTCGTTGTTGCACGAACTTCT
196 TTGGTTCTTGGACGAACTTCT
* * * * * *
3390 GAACATGTCAAACTTTTACGAGTTCTTTTTTAACTACGGTTCCTTAAAGTGTTCAAGACGATACA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * ** * *
3455 TTCCTTCGAGTAATTTTTCAAACAATCAATGCTCAAGAAATTGCATCATTTAGTCTAAATAGTTT
66 TTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
3520 TTCATTTTGTAAA-ATAGTTTTGGTCTTTGAATTAAAAACTTGTTTACGTGAGAATTCTTTCTCT
131 GTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
3584 CTTGGTTCTTTGACGAACTTCC
195 CTTGGTTCTTGGACGAACTTCT
* * * * * * *
3606 GAAATTGACAAACATTTATC-AGTACTTTTATAACTTC-GTTTCATTAAAGTGTTCAAGACAATC
1 GAACTTGTCAAACTTTTA-CGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATC
**** * *
3669 CATTCCTTCT-ATTTGTTTTTCGAACATTCCATTCTCAGGAAATCGCATCATTTGGTCTAAATAG
64 CATTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* **
3733 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACATATTTATTTGAGAATTGTTTCT
128 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* *
3798 CTCTTGGTTTTTGGATGAACTTAC-
193 CTCTTGGTTCTTGGACGAACTT-CT
** * * * *
3822 GAACTTGTCAAACTTTGCCAAGTTCTTTTATAACTT-TGATTCCTTAAAGTATTCAAAATGGTCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATCC
* * * * * *
3886 ACTCCTTCGAGCAATTTTTTGAACAATCCATGCTCGGGAATTCGCATCATTCGGTCTAAATAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * *
3951 TCTTATTTTGTAAACAAGTTTTGGTCTTTCAATTAAAAACTTATTTACTTGAGAATTGTTCCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
4016 ATTGGTTCATGGACGAACTT-T
195 CTTGGTTCTTGGACGAACTTCT
* * * **
4037 CGATCTTGT-AGAAATTTTACGAGTTATTTTATAACTTC-GATTCCTTAAAGTATTCAAGATTAT
1 -GAACTTGTCA-AACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGAT
* * * * *
4100 CCATT-CTTTCAAGCAATTTTTCAAACATTCCATGCTAGGGAAATCACATCATTTGGTCTAAAAA
63 CCATTCCTTT-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* * * * * * *
4164 TTTTGTCATTTTTTAAACAAGTTTTGGCCTTCGAATTAAAATCTTATTTACATGA-AATTGTTTA
127 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
*
4228 TCTCTTGGTTCTTGGACAAACTT-T
192 TCTCTTGGTTCTTGGACGAACTTCT
* * * *
4252 CGAACTTGTCAAACTTTTACGAGTTCTTTTATATCTTTTGTTCCTTCAAGTATTCAAGACGATCT
1 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCC
* * * *
4317 ATTCCTTTGAGCAATTTTTGGAACATTTCATGCTCGAGAAATCACATCAATTT-G--T--ATA--
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC-ATTTGGTCTAAATAGT
* * * *
4375 ---ACATTTTGTAATCAAGTTTTGGTGTTTGTATTAAAAACTTATTTACGTGAGAATTGTTTCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* *
4437 TCTTGGTTCTTTGACGAAATTCT
194 TCTTGGTTCTTGGACGAACTTCT
* * * * * * * * *
4460 GAAATTGACAAACATTTATGAGTACTTTTATAACTTCAGTTCATTACAGTGTTCAAGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * ** *
4525 TTCCTTCT-AGCAGTTTTTCGAACATTCCATTCTCGAAAAATCGCATCATTTGGCCTAAATAGTT
66 TTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * **
4589 TGTCATTTTGTAAACAGGTTTTGGTATTTGAATTAAAAAGTTATTTATTTGAGAATTGTTTCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * *
4654 CTTGGTTTTTTGACGAACTTCC
195 CTTGGTTCTTGGACGAACTTCT
* * **
4676 GAACTAGTCAAACTTTGT-CGAGTTCTTTTATAACTT-TGATTCTTTAAAGTATAAAAGACGATC
1 GAACTTGTCAAACTTT-TACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATC
* * * *
4739 CATTCCTTTGAGCAATTTTTCGAACATTCCACGCTCTGGAAATCGCATCATTCGGTCAAAATAGT
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * *
4804 TTCTCATTTTGTAAACAAGTATTGGCCTTTCAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* *
4869 TCTTGGTTCTTGAACAAACTTCT
194 TCTTGGTTCTTGGACGAACTTCT
* * * * ** *
4892 GAAATTGACAAACATTTACTAGTTCTTTTATAACTT-TGTTTCAGTAAAGTATTCAAGTCGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATCC
* *
4956 ATTCCTTCT-AGCAATTTTTTGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGT
65 ATTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* *
5020 TAT-TCATTTTGTAAACAA-TATTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTGTC
129 T-TGTCATTTTGTAAACAAGT-TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* **
5083 TCTCTTGGCTCTTGGGTGAACTTCT
192 TCTCTTGGTTCTTGGACGAACTTCT
* *
5108 GTAA-TTGTCGAACTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTAAAGTATTCAAGATGATC
1 G-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTTCCTTAAAGTATTCAAGACGATC
* * * * * * *
5171 TAATCCTTCGAGCAATTTTTTGAACATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAAAAGT
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * *
5236 TTGTAATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTATCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* *
5301 TCTTGGTTGTTGGATGAACTTCT
194 TCTTGGTTCTTGGACGAACTTCT
* * *
5324 GAACTTTTCAAACTTTTACGAGTTTTTTTTTAACTTC-GATTCCTTAAAGTATTCAAGACGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATCC
* ** * * *
5388 ATACCTTCAAGTAATTTTTCGAACATTCAATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * **
5453 TTTCATTTTCTAAA-ATAGTTTTGGTCTTTGCATTAGAAACTTGCTTACGTGAGAATTGTTTCTC
130 TGTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
** * *
5517 TCTTGGTTCTTTTACGGACTTCC
194 TCTTGGTTCTTGGACGAACTTCT
* * * * ** * * * * * *
5540 AAAATTGACAAACATTTATTAGTACTTTTATAAATTCGGTTCATTAAAGTGTTCAAGAAGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * *
5605 TTCCTTCT-AGCAGTTTTTCAAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
66 TTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * *
5669 TCTCATTTTGTAAACAAGTTTTGGTCTTTCAAGTAAACACTTATTTACGTGAGAATTGTTTCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
*
5734 CTTGGTTCTTGGACGAACTTTT
195 CTTGGTTCTTGGACGAACTTCT
* * * *
5756 GAAATTTGTCGAACTTTTACGTGTTCTTTTATAACTT-TGGTTCCTTAAAGTATTCAAGATGATC
1 G-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTTCCTTAAAGTATTCAAGACGATC
** * * * * * * * * *
5820 CAACCCTTCGAGCAATATTTCGAATATTCCATGTTTGGCAAGTTGCATCATTTGGTCTAAAAAGT
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * ** * * ** * *
5885 TTGTCGTTTTGTAAAAAAAATTTGGCCTTTGAATTAAAAACTTATTTATGTGAGAATCATTTTTT
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * *
5950 TGTTAGTTGTTGGACGAACTACT
194 TCTTGGTTCTTGGACGAACTTCT
* * * * *
5973 GAACATGTCAAACTTTTACGAGATCTTTTTTAACTTC-GATTGCTTAAAGTGTTCAAGACGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATCC
* * * * *
6037 ATTCCTTCGAGTAATTTTTCAAACATTCAATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * *
6102 TTTCATTTTCTAAA-ATAGTTTTGGTCTTTGAATTAAAAACTTGTTTACGTGTGAATTGTTTCTT
130 TGTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* **
6166 TCTTGGTTTTTTTACGAACTTCT
194 TCTTGGTTCTTGGACGAACTTCT
*** * * * * * * * *
6189 GAAAC-TAAAAAACATTTATGAGTACTTTTATAACTTCAGTTCATTAAACTGTTCAAGACGATAC
1 G-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCC
* * * *
6253 ATTCC-TTGTAGCAGTTTTTCGAACATTCCATTCTCGGGAAATCGTATCATTTGGTCAAAATAGT
65 ATTCCTTTG-AGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * * ** *
6317 TTGTCAGTTTGTAAACATGTTTTGGTTTTTAAATTAAAAACTTATTTATTTGATAATTGTTTCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * **
6382 ACTTGCTTTTTCAACGAACTTCT
194 TCTTGGTTCTTGGACGAACTTCT
* ** *
6405 GAACTAGTCAAACTTTGCCGAGTTCTTTTATAACTTCTATTCCTTAAAGTATTCAAGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
6470 TTCCTTCGAGTAATTTTCCAAACATTCCACGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTT
66 TTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * *
6535 CTCATTTTGTAAACATGTTTTGGTCTTTAAATTAAAAACATATTTACGTGAGAATTATTTCTCTC
131 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
6600 TTGGTTCTTGGACGAACTTCT
196 TTGGTTCTTGGACGAACTTCT
* * ** * * ** *
6621 GAATTTGACAAACTTTTACGAGTTCTTTTATAACTTGGGTGCATTAAAGTATTCAAGACTTTCTA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
6686 TTCCTTCT-ATCAGTTTTTCGAAAATTCCATTCTCAGGATATCGCATCATTTGGTCTAAATAGTT
66 TTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * ******
6750 TTTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTANNNNNNNNNNNNNNNNNN
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA------------CGTGAG
*********************************
6815 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
183 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT
* **** * ** * * * * * * * *
6849 GAGAATTGTGTCTCTCTT--G-GTTCTTGGACGAACTTCTAAAATT-GTCAAACTTTTACGAGTT
1 GA-ACTTGTCAAACTTTTACGAGTTCTTTTA-TAACTTCT---GTTCCTTAAAGTATT-CAAG-A
* * * * *
6910 CTTTTATAACTTCAGTTCCTTAT-AG----TATTC-AAGATGATCCAATCCTTCGAGAAATTTTT
59 C---GAT--C--CA-TTCCTT-TGAGCAATTTTTCGAACAT--TCC-ATGC-TCGGGAAA----T
* * * *
6969 TGAACATTCCATGCTCGGCAAGTCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAAAAAGT
107 CG--CA-T-CAT--T-TG---GT--C-T-A--------AAT-AGTTTGTCATTTTGTAAACAAGT
* * * * * *
7034 TTTCGCCTTTGAATTAAAAACTTATTTACGTGAAAATCGTTTCTCTCTTGGTTGTTGAACGAACT
149 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
7099 TCT
214 TCT
* * * * * * *
7102 GAACATGTTAAACTTTTACGAATTCTTTTTTATCTTCGGTTCCTTAAAGTGTTCAAGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * *
7167 TTCCTTCT-AGTAAGTTTTC-AATCATTCAATGCTCGAGAAATCGCATCAATTGGTCTAAATAGT
66 TTCCTT-TGAGCAATTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * *
7230 TTCTCATTTTCTAAA-ATAGTTTTGGTCTTTGAATTAAAAACTTGTTTACGTGAGAATTG--T-T
129 TTGTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
** *
7291 -TCTTGGTTCTTATACGAACTTAT
193 CTCTTGGTTCTTGGACGAACTTCT
* * * * * * * * *
7314 GAAATTGACAAACATTTATGAGTACTTTTATAACTTCAGTTCATTAAAGTGTTCAATACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
7379 TTCCTTCT-AGTAGTTTTTCGAACATTCCATTCTCGAGAAATTGTATCATTTGGTCTAAATAGTT
66 TTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * ** *
7443 TGTTATTTTGTAATCAGGTTTTGGTCTTTGAATTAAAAACTTATTTATTTGAGAAAT-TTTCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
7507 CTTGGTTTTTCGACGAACTATC-
195 CTTGGTTCTTGGACGAACT-TCT
* *
7529 GAACTAGTCAAACTTTGT-CGAGTTCTTATATAACTT-TGATTCCTTAAAGTATTCAAGACGATC
1 GAACTTGTCAAACTTT-TACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATC
* * * * ** * *
7592 CATTCCTTCGAGTAATTTTCCGAACATTCCACGCTTTGGAAATCGTATCATTCGGTCTAAATAGT
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * * *
7657 TTCTCATTTTGTAAACAAGTTTCGGTCTATAAATTAAAAACTTATTTACGTGAGAATTTTTTCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
*
7722 TCTTTGTTCTTGGACGAACTTCT
194 TCTTGGTTCTTGGACGAACTTCT
* * * * * * * *
7745 AAAATTGACAAACTTTTACGAGTTCTTTTATAACTTCGGTGCATCAAAGTATCCAAGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
7810 TTCCTTCT-TGTAGTTTTTCGAACATTCCATTCTCTGGAAATCACATCATTTGGTCTAAATAGTT
66 TTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * ** * *
7874 TTTCAATTTGTAAACAA-TATTTCATCTTTGAATTAAAAAATTATTTACGTGAGAATTGTGTCTC
130 TGTCATTTTGTAAACAAGT-TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
*
7938 TCTTGGTTCTTGGGCGAACTTCT
194 TCTTGGTTCTTGGACGAACTTCT
* * * *
7961 GAAATTGTCGAA-TGTTTACGAGTTCTTTTATAACATT-GGTTCCTTAAAGTATTCAAGATGATC
1 GAACTTGTCAAACT-TTTACGAGTTCTTTTATAAC-TTCTGTTCCTTAAAGTATTCAAGACGATC
* * * * * * *
8024 CAATCCTTCGAGCAAATATTCAAACATTCCATCCTCGGGAAGTCGCATCATTTGGTCTAAA-AGG
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA-G
* * *
8088 TTTGTCATTTTGTAAACAATTTTTGGCCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCT
128 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
*
8153 CTCTTGGTTGTTGGACGAACTTCT
193 CTCTTGGTTCTTGGACGAACTTCT
* * *
8177 GAACATGTCAAACTTTTACGAGTTCTTTT-TGAACTTCGGTTCCTTAAAGTGTTCAAGACGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTAT-AACTTCTGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * * * *
8241 AATCGTTCGAGTAATTTTTCGAACATTCAACGCTCGAGAAATCGCAACATTTGATCTAAATAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * *
8306 TTTCATTTTGTAAA-ATAGTTTTGGTCTTTGAATTAAAAACTTGTTTACGTGAGAATTATTTCTC
130 TGTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * *
8370 TCTTGGTTCTTTGACAAACTTCC
194 TCTTGGTTCTTGGACGAACTTCT
* * * * * * * * *
8393 GAAATTGACAAACATTTATGAGTACTTTTATAACTTCAGTTCATTATAGTGTTCAAGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * *
8458 TTCCTTCT-AGTAGTTTTTTGAACTTTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
66 TTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* ** * *
8522 TGTCATTTTGGAAA-AAGGTTTTGGTCTTTGAATT-AAAACTTATTTATTTCAGAATCGTTTCTC
130 TGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
*
8585 TCTTGGTTTTTGGACGAACTT-T
194 TCTTGGTTCTTGGACGAACTTCT
* * * * ** *
8607 CGAACTCGTCAAACTTTGACTAGTTCTTTTATGACTTC-AATCCTGAAAGTATTCAAGACGATCC
1 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCC
* ** * * * * *
8671 ATTCCTTCGAGCAATTTTTCGAACATTCCACACTCTGAAAATCGCATCACTCGGTCAAAATAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * *
8736 TCTTATTTTGTTAACAAGTTTTGGTCTTTCAATTAAAAACTTATTTATGTGAGAATTGTTTCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
8801 CTTGCTTCTTGGACGAACGTCT
195 CTTGGTTCTTGGACGAACTTCT
* ** * * * * *
8823 GAAATTGAAAAACTTTTACAAGTTCTTTTATAACTTC-GATGCATCAAAGTATCCAAGACGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATCC
* * * * * * *
8887 ATTCCTTCT-AGTAGTTTTTCTAACATTTCATTCTTGAGAAATCGCATCATTTGGTCTAAATAGT
65 ATTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* *
8951 TTTTCATTTTGTAAA-AAGGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
129 TTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* *
9015 CTTTTGGTTATTGGACGAACTTCT
193 CTCTTGGTTCTTGGACGAACTTCT
* * * * * *
9039 AAAATTGTCTAACTTTTATGAGTTCTTTTATAACTT-TGGTTCCTTAAAGTATTTAAGATGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTTCCTTAAAGTATTCAAGACGATCC
* * * * * *
9103 CTTCCTTTGAGCAGTTTTTCGAGCATTCCGTGCTCGAGAAGA-CGCATCATTTGGTCTAAAAAGT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAA-ATCGCATCATTTGGTCTAAATAGT
** * *
9167 TTGTCATTTTGTAAACAAGTTTTGACCTTTGAAGTAAAAACTTGTTTACGTGAGAATTG-TTCAT
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC-T
* ** * *
9231 CTTTTAATTGTTGGACGAACATCT
193 CTCTTGGTTCTTGGACGAACTTCT
* * * * *
9255 GAACATGTCAAACTTTTACGAGTTCTTTTTTAACTT-TGGTTCCTCAAAGTGTTCAAGATGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTTCCTTAAAGTATTCAAGACGATCC
* * * * * ** *
9319 ATTCGTTCGAGTAA-TTTTCGAACA-TCCAACGCACTAGAAATCGCATCATTTGCTCTAAATAGC
65 ATTCCTTTGAGCAATTTTTCGAACATTCC-ATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-
* * * * *
9382 TTT-TCATTTTG-AAAAATAGTTTTCGTCTTTGAATTAAATACTTGTTTACGTGAGAATTATTTC
128 TTTGTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* *
9445 TCTCTTGGTTCTTTGACGAACTTCC
192 TCTCTTGGTTCTTGGACGAACTTCT
* * * * * ** * * *
9470 AAAATTGACAAACATTTATGAGTAATTTTATAACTTCGGTTCATTAAAGTGTTCAAGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
9535 TTGCTTCT-AGCAGTTTTTCGAAGATTCCATTCTTGAGAAATCGCATCATTTGGTCTAAATAGTT
66 TTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * ** *
9599 TTTCATTTTGTAAACAAGTTTTGGTTTTTAAATTAAAAACTTACTTATTTTAGAATTGTTTCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
9664 TTTGGGTT-TTGGATGAACTT-T
195 CTT-GGTTCTTGGACGAACTTCT
* * * * *
9685 CGAACTTGTCAAACTTTTCCAAGTTCTTTTATAACTTC-GATTCCTTAATGTATTCCAGATGATC
1 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATC
* * * ** *
9749 CATTCCTTTGAGAAATTTTTCGAACATTCCACGCTCTGGAAATCAAATCATTCGGTCTAAATAGT
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * *
9814 TTCTGATTTTGTAAACAAATTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* *
9879 TCTTAGTTCTTGGACGAACTTTT
194 TCTTGGTTCTTGGACGAACTTCT
* * * * * *
9902 AAAATTGACAAACTTTTACAAGTTCTTTTATAACTT-TAGTTCATTAAACTATTCAAGACGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTTCCTTAAAGTATTCAAGACGATCC
* * * * * * **
9966 ATTCCTTCGAGTAGTTTTTCAAACATTCCATGCTCCGGAAGTCGCATCATTTTATCTAAA-ATGT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA-GT
* * * * * * *
10030 TTATTATTTTATAAACAAGTTTTGGCCTTTTAATTAAAAACTTATTTACATGAGAATTTTTTCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
10095 TCTTGGTTGC-TGGACGAACATT-T
194 TCTTGGTT-CTTGGACGAAC-TTCT
* * * *
10118 GAACTTGTCAAACTTTTAAGAGTTCTTTTTTAACTTCAGTTCCTTAAAGTGTTCAAGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * ** * * * *
10183 TTGCTTCGATTAATTTTTTGAACATTCAACGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
66 TTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
10248 TTCATTTTGTAAA-ATAGATTTGGTCTTTAAATTAAAAAC-TAGTTTACGTGAGAATTGTTTCTC
131 GTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTA-TTTACGTGAGAATTGTTTCTC
* * * *
10311 CCTTGGTTCTTTGACGAAATTCC
194 TCTTGGTTCTTGGACGAACTTCT
* * ** * *
10334 GAAATTGACAAA-TATTTATAAGTTCTTTTATAACTTC-GATTCATTAAAGTGTTCAAGACGATC
1 GAACTTGTCAAACT-TTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATC
* * * *
10397 CA-TCCTTCT-AGCAGTTTTTCGAACATTTCATTCTCAGGAAATCGCATCATTTGGTCTAAATAG
64 CATTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* ** *
10460 TTTGTCATTTTGTAAACAATTTTTGGTCTTTGAATTAAAAACTTATTTATTTGGGAATTGTTTCT
128 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* ** *
10525 CTCTTGGTTTTTGGATAAACTTCC
193 CTCTTGGTTCTTGGACGAACTTCT
* * * *
10549 GAACTTGACAAAC-TTTACCAAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACAACC
1 GAACTTGTCAAACTTTTA-CGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATC
** * * * **
10612 CATTCCTTCAAGCAATTTTTCGAACATTCCACGCTCTGAAAATCGCATCATTCAGTCTAAATAGT
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * * * * *
10677 TTCTCATTTTGTAAACAAGTTTTGGACTTTCAATTAAAAACTTATTTACATGAGAATTATTCCAC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * * *
10742 TATTGGTTCATGGATGATCTTCC
194 TCTTGGTTCTTGGACGAACTTCT
* ** * * * *
10765 GATCTTGT-GGACATTTTACGAGTTCTTTTATAATTTCGGTTCCTTAGAGTATTCAAGATGATCC
1 GAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * * * * *
10829 ACT-CTTACGAGTAGTTTCTAGAACATTTCATGCTTGGGAAATTGCATCATTTGGTCTAAA-ATT
65 ATTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * *
10892 TTTTCATTTTTTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * *
10957 TCTTGGCTCTTGAACAAAATTCT
194 TCTTGGTTCTTGGACGAACTTCT
* * * *
10980 AAACTTGTCAAACTTTTACGAGTTCTTTTATATCTT-TGGTTCC-TATAAGTATTTAAGACGGTC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTTCCTTA-AAGTATTCAAGACGATC
* * * * * * *
11043 CATTCCTTCGCGCAGTTTTTCAAACATTCCATGCTCGGGAAATCACATCGTTCGGTCTAAATAGG
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA-G
* * * *
11108 TTT-TCATTTTGTAATCAAGTTTTGGTGC-TTGTATTAAAAACTTATTTATGTGAGAATTATTTC
128 TTTGTCATTTTGTAAACAAGTTTTGGT-CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* *
11171 TCTCTTTGCTCTT-GACGAACTGTC-
192 TCTCTTGGTTCTTGGACGAACT-TCT
* * * * * * * *
11195 AAAATTGTTAAAATTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGACGGTCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * *
11260 TTCCTTTTAGTAGTTTTTCGAACA-TCCTATGCTCGGGAAATCGCATCATTCGGTCTAAATAGCT
66 TTCCTTTGAGCAATTTTTCGAACATTCC-ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * **
11324 TATCATTTTGT-AACAAGTTTTTGTCTTTGAATTAAAAATTTATTTATTTGAGAATTGTTTCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
11388 CTTGGTTTTTGGACGAACTTTT
195 CTTGGTTCTTGGACGAACTTCT
** * ** * * *
11410 GAACTTGTCAAACTTTGCCAAGTTCTTTTATAACTTAGGTTCCTTAATGTGTTCAAGTCGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * * ** * * *
11475 TTCCTTCGAGCATTTTTTCGAACAGTCCACGCTCTGAAAATCAAAACATTCGATCTAAATAGTTT
66 TTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * *
11540 CTCATTTTATAAACAAGTTTTGGTATTTCAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTA
131 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
11604 TTGGTTCTTGGAC-AAGCTTCT
196 TTGGTTCTTGGACGAA-CTTCT
* * * * * * * *
11625 GAAATTGACATACTTTTAC----TCTTCTATAACTTCGGTTCATTAAAGTATTCAAGACGAACCT
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * *
11686 TTCCTTCT-AGAAAATTTTCAAACATTCCATTCTCGGGAAATCGTATCATTTGGTCTAAA-AGTT
66 TTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * *
11749 TTTCATTTTGTAAACAAGTTTTGATCTTTGAATAAAAAACTTATTTATGTGAGAATTGTGTC-CT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
*
11813 ATTGGTTCTTGGACGAACTTCT
195 CTTGGTTCTTGGACGAACTTCT
* * * *
11835 GAAATTGTCGAACTTTTACGAGTTCTTTTATAACTT-TGGTTACTTAAAGTATTCAACACGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTTCCTTAAAGTATTCAAGACGATCC
* * * * *
11899 AATCCTTCGAGCAATTTTTCTAACATTCCATGCTCGGGAAGTCGCATCATTTGGTCTATAA-GGT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA-AATAGT
* * ** *
11963 TTGTCATTTGGTAAACAAGTTTTAGG-CTTTGAATTAAAAAATTATTTATTTTAGAATTGTTTCT
129 TTGTCATTTTGTAAACAAGTTTT-GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* ** *
12027 AT-AAGGTTTGTCATTTGGTA--AACATTTAT
193 CTCTTGG--T-TC--TTGG-ACGAAC--TTCT
* * * * *
12056 GAGTACTTCT-ATAAC--TT-CG-GTTC-ATTAT-A---GTGTT-C--AAGACG-ATCCATTG-C
1 GA--ACTTGTCA-AACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAA-A-GTATTCA-AGAC
* * * * * * * *
12106 -TTCTAGCAGTT-TTTTGAAC-ATTTCATTCTCAACAAATCGCAT-CATTTGGTCTAAATAG--T
60 GATC---CA-TTCCTTTGAGCAATTT--TTC-GAAC-ATTC-CATGC--TCGG--GAAATCGCAT
** *
12165 --TTT--TC---AT--TTTGT-A------AAGA-AGTTTT-GGACTTTGAATTAAAAACTTATTT
112 CATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAAGTTTTGGTCTTTGAATTAAAAACTTATTT
** * * * * * * * *
12212 ATTTTAGAATTGTTTCTCTTTTGGTTTTTGGATGAACTT--CCGAACCTGTC-
176 ACGTGAG-A---ATTGT-TTCT--CTCTTGG-T--TCTTGGACGAA-CT-TCT
* *
12262 AAACTT-TGC---C----A--AGTTCTTTTATAACTTC-GATTCCTTTAAGTATTCAAGACGATC
1 GAACTTGT-CAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATC
* * * * ** * * *
12316 CATTCCTTCGTGCAATTTTTCGAACATTACACGCTTTGGAAATTGAATAATTTGGTCTAAATAGT
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * * * *
12381 TTCTCATTTTGTAAACAAATTTTGGTCTTTCAATTAAAAACTTATTTACGTTAGTATTATTTCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
12446 TCTTGGTTCTTGGACGAACTTCT
194 TCTTGGTTCTTGGACGAACTTCT
* * * * *
12469 GAATTTGTCAAACTTTTACAAGTTCTTTTATAA-TATCAGATCATTAAAGTATTCAAGACGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACT-TCTGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * * * *
12533 ATTCCTTCGAGCAGTTTTTCAAACATTCCATGTTTGGGAAGTCACATCATTTTGTCTAAAAAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * * *
12598 TTTCATTTTGTTAACAAGTTTTGGCCTTTGAATTAAAAATTTATTTACGAGAGAATTTTTTCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
12663 CATGGTTGTTGGACGAACTGT-T
195 CTTGGTTCTTGGACGAACT-TCT
* * * * *
12685 GAACTTGTCAAAGTTTTAAGAGTTCTTTT-TAAACTTCAGTTCCTTAAAGTGTTCAAGATGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTAT-AACTTCTGTTCCTTAAAGTATTCAAGACGATCC
* * * * *
12749 ATTCCTTCGA-CTAATTTTTTGAACATTCAACGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
65 ATTCCTTTGAGC-AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * *
12813 TTTTCATTTTGTAAA-ATA-TATTTGGTCTTTAAATTTAAAAC---TTTACGTGAGAATTGTTTC
129 TTGTCATTTTGTAAACA-AGT-TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* *
12873 TCTCTTGGTTCTTTGATGAACTTCT
192 TCTCTTGGTTCTTGGACGAACTTCT
* * * * * * * * * *
12898 GAAATTGACTAACATTTATGGGATCTTTTATAACTTCGGTTCATTAAAGTGTTCAAGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
12963 TTCATTCT-AGTAGTTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTATAAATAGTT
66 TTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
** *
13027 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTATTTGAGAATTGTTTATCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
13092 CTTGGTTTTTGGATGAACTT-T
195 CTTGGTTCTTGGACGAACTTCT
** * * *
13113 CGAACTTGTCAAACTTTGCCAAGTTCTTTTATAACTAC-GATTCCTTAAAGTGTTCAAGACGATC
1 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATC
* * * * * * ** *
13177 CATTCCTTCGAGCAATTTTTTGAACATTCCACGCTCTGAAAATTGCATCATTCAGTTTAAATAGT
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * * *
13242 TTCTCATTTTGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAAAATTATTTCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * *
13307 TCTTGGTTCTTGGATGAGCTTTT
194 TCTTGGTTCTTGGACGAACTTCT
* ** * * * * *
13330 GAAATTGAAAAACTTTTAGGAGTTATTTTTTAACTTCGGTTCATTAAAGTATTCAAGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * * *
13395 TTCCTTTTAGTAGTTTAT-GAACATTCCATTCTAGGGAAATCGCATCATTTCGTCTAAATAGTTT
66 TTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* ** * * ** * *
13459 TTCATTTTGTAAACAAGTTTTGAACTTTCAATTAAAAACTTATTTACATGAGAATAATGTCTCTA
131 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
13524 TTGGTTCTTGGACGAACTTCT
196 TTGGTTCTTGGACGAACTTCT
* * * * * * *
13545 GAAATTGTCGAACTTTTATGAGTTCTTTTATAACTCCGGTTCCTTAAAGTATTGAAGACGATGCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* ** * * *
13610 ATCCTTCAAGCAATTTTCCTAACATTCCATGCTCGGGAAGTCGCATCATTTGGTCTAAA-AGGTT
66 TTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA-GTT
* * *
13674 TGTCATTTTGTAGACAAGTTTTGGCCTTTGAATTAATAACTTATTTACGTGAGAATTGTTTCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
13739 CTTGGTTGTTGGACGAACTTCC
195 CTTGGTTCTTGGACGAACTTCT
* * * * * * *
13761 AAACTTGTTAAACTTTTATGAGTTCTATTT-TATCTTCGGTTCCTTAAAGTGTTCAAGACAATCC
1 GAACTTGTCAAACTTTTACGAGTTCT-TTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCC
** * * * * * * * * *
13825 ATTCCTTCAAGTAATTTTCCAAAAATTCAACGCTCGAGAAATCACATTATTTGGTCTAAATAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * ** *
13890 TTTCATTTTGTAAA-ATAGTTTTGGTCTTTGACTTTAAAATTTTGTTTACGTGAGAATTGTTTCT
130 TGTCATTTTGTAAACA-AGTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * *
13954 CTCTTGGTTCTTTGACGGACTTTT
193 CTCTTGGTTCTTGGACGAACTTCT
* * * * * * *
13978 GAAATTGACAAACATTTT-TGAGTTCTTTTATAACTT-TGATTCATTAAACTGTTCAAGAGGATC
1 GAACTTGTCAAAC-TTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATC
* * * * *
14041 CATTGCTTCT-AGCAATTTTTCAAACATTCCATTCTCTGGAAATCACATCATTTGGTCTAAATAG
64 CATTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* ** *
14105 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAATTTATTTATTTGAGAATTATTTCT
128 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* *
14170 CTCTTGGTTTTTGGACGAACTTCC
193 CTCTTGGTTCTTGGACGAACTTCT
* * * * * * * * * * * *
14194 AAACTTGACAAAATTTTCCAAATTCTTTTTTATCTTC-GATTACTTAAAGTGTTAAAGATGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATCC
* ** * * * * * *
14258 ATTCCTTCGATTAAATTTTCGAACATACAACGCTCGAGAAATTGCATCATTTGGTCTAAATAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * * **
14323 TTTCATTTTGTAAACAAGTTTTGATCATTCAATTAAAAACTTGTTTATATGAGAATTGTTTCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
*
14388 CTTGGTTCTTGGATGAACTT-T
195 CTTGGTTCTTGGACGAACTTCT
* * * * * * *
14409 CGAAATTGACAAACTTTTATGAGTTCTTTTATAACTTCAGTTCATTAAAGTATTCAACAAGATCC
1 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCC
* * ** * * **
14474 ATTCCTTCT-AGTAGTTTTTAAAACATTCCATTCTCGGGATATCGCATCATTTGGTCTAAACGGT
65 ATTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * ** **
14538 TTGTCATTTTGTAAACCAGTTTTTGTCTTTGAATTAAAAACATATTTATTTGAGAATTGTCCCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* *
14603 TATTGGTTCATGGACGAACTTC-
194 TCTTGGTTCTTGGACGAACTTCT
* ** * * * *
14625 CAATCTTGT-AGAAAGTTTACGAG-TCTTTTATAACTTCGGTTCCATAAAGTGTTCAAGATGATC
1 GAA-CTTGTCA-AACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATC
* * * * * *
14688 CACT-CTTTCGAGCAATTTTTTGAATATTCCATGCTCGGGAAATCGCATCATTTGGTCAAAAAAT
64 CATTCCTTT-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* * * * * * *
14752 TTTGTCATTTTTTAAACAAGTTTTGGCCATGGAATTAAAAACTTGTTTACATGAGAATTATTTCT
128 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * *
14817 CTCTCGGCTCTTGGACAAAATTCT
193 CTCTTGGTTCTTGGACGAACTTCT
* * * * *
14841 GAACATGTCAAACCTATAGGAGTTCTTTTATATCTT-TGGTTCCCTT--AGTATTCAAGACGATC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTT-CCTTAAAGTATTCAAGACGATC
* * * * * * *
14903 CAATCCTTTGACCATTTTTTCGAACATTCCAAGCTCGGGAAATCACATCATTCGATCTAAATAGT
64 CATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * * ** *
14968 TTTTCATTTTGTAATCAAGTTTTGGTGTTTGTATTAAAAACTTATTTGTGTGAGAATTATTTCTC
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * *
15033 TTTTTGTTCTTGGATGAACTT-T
194 TCTTGGTTCTTGGACGAACTTCT
* * * * * * * *
15055 CGAACTTATCAAAATTTTACAAGTTCTTTTTTAACTTCGGCTCCGTAAAGTATTCAAGACGGTCC
1 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCC
* * * * *
15120 ATTCCTTTTAGTAGTTTTTCGAACATTCCATGCTCGGGAAATCACATCATTCGGTCTAAATAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * **
15185 TTTCATTTTGTAAACAAGTTTTGGTCTTTCAATTAAAAACTTATTTACACGAGAATTGTTTCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
15250 CTTGGTTGTTGGACAAACTTCT
195 CTTGGTTCTTGGACGAACTTCT
* ** * * *
15272 AAACTTGTCAAACTTTTACGAGCACTTTTTTAACTCCTGTTCCTTAAAGTGTTCAAGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * ** *
15337 TTCCTTTGAGTAATTTTTTGAACATTCCATGCAAGGGAAATCACATCATTTGGTCTAAATAGTTT
66 TTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * * *
15402 TTCTTTTTGTAAACAAGTTTTGATCTTCGAAATAAAAACCTATTTACGTGA-AATTATTTTCTCT
131 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT-GTTTCTCT
* *
15466 CTTGGTTCTTGAACGAATTTCT
195 CTTGGTTCTTGGACGAACTTCT
* ** * * *
15488 GAAATTGAAAAACTTTTACGAGTTCTTTTATAACTT-TAGTTCATTAATGTATTCAAGATGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTTCCTTAAAGTATTCAAGACGATCC
* * * *
15552 ATTCCTTCT-AGCAGTTTTTCAAACATTCCATTCTCGAGAAATCGCATCATTTGGTCTAAATAGT
65 ATTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * *
15616 TTTTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGT-ACGAATTATGTCT
129 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCT
15680 CTCTTGGTTCTTGGACGAACTTCT
193 CTCTTGGTTCTTGGACGAACTTCT
* *
15704 GAAATTGT----C----GCGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGATCC
* * * ** * *
15760 AATCCTTCGAGCAATTTTTTGAACATTCCATGCTCAAGAAGTCGCATCATTTGGTCTAAA-ATTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * *
15824 TGTCATTTTCTAATCAAGTTTTGGCCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
15889 CTTGGTTGTTGGACGAACTTTT
195 CTTGGTTCTTGGACGAACTTCT
* * * *
15911 GAACTTGTTAAACTTTTACGAGTTCTTTTTTAACTT-TATTTCCTTAAAGTGTTCAAGACGATCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTTCCTTAAAGTATTCAAGACGATCC
* * * * * * * *
15975 ATTCCTTCGAGTAATTTTCCGAACATTCAACGCTCGAGCAATCACATCATTTGGTCTAAATAGTT
65 ATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * ** * *
16040 T-TCCATTCTGTAAAAAAAG-TTT-GTCTTTGAATTAAAAGTTTGTTTACGTGAAAATTGTTTCT
130 TGT-CATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * *
16102 CTCTTGGATCTTTGACGAACTTCC
193 CTCTTGGTTCTTGGACGAACTTCT
* * * * * * * * * *
16126 GAAATTGACAAACATTTATGAGTACTTTTATAACTTCGGTTCATTAAAATGTTCAAGACGAACCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * * *
16191 TTCCTTCT-AACAGTTGTTCGAATATTCTATTCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
66 TTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* ** ** * * *
16255 TGTCATTTTGTATACAAGTTTTGGTCTTTGAATTAAAAAAATATTTATTTAAGAATTATTTTTCT
130 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
16320 CTTGGTTTTTGGACGAA-TTTT
195 CTTGGTTCTTGGACGAACTTCT
* * * * *
16341 CGAACTTGACCAACTTTGT-CAAGTTCTTTTATAACTT-TGATTCCTTAAATTATTCAAGACAAT
1 -GAACTTGTCAAACTTT-TACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGAT
* * * *
16404 TCATTCCTTCGAGCAA-TTTTCAGAACATTCCACGCTCTGGAAATC
63 CCATTCCTTTGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATC
16449 CAATCCAATC
Statistics
Matches: 13007, Mismatches: 2536, Indels: 1053
0.78 0.15 0.06
Matches are distributed among these distances:
197 5 0.00
199 8 0.00
200 6 0.00
201 10 0.00
202 30 0.00
203 16 0.00
204 13 0.00
205 7 0.00
206 86 0.01
207 408 0.03
208 190 0.01
209 86 0.01
210 207 0.02
211 127 0.01
212 183 0.01
213 189 0.01
214 309 0.02
215 2620 0.20
216 7626 0.59
217 458 0.04
218 17 0.00
219 12 0.00
220 7 0.00
221 12 0.00
222 1 0.00
223 8 0.00
224 109 0.01
225 31 0.00
226 21 0.00
227 7 0.00
228 3 0.00
229 17 0.00
230 4 0.00
231 1 0.00
232 1 0.00
233 1 0.00
234 6 0.00
235 6 0.00
236 5 0.00
237 5 0.00
238 6 0.00
239 10 0.00
242 11 0.00
243 10 0.00
244 5 0.00
245 4 0.00
246 9 0.00
247 4 0.00
248 1 0.00
249 1 0.00
250 1 0.00
251 5 0.00
252 17 0.00
253 3 0.00
254 7 0.00
255 6 0.00
256 1 0.00
264 2 0.00
265 46 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (216 bp):
GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATCCA
TTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
TTGGTTCTTGGACGAACTTCT
Found at i:3524 original size:21 final size:20
Alignment explanation
Indices: 3500--3540 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
3490 AGAAATTGCA
*
3500 TCATTTAGTCTAAATAGTTTT
1 TCATTTAGT-AAAATAGTTTT
*
3521 TCATTTTGTAAAATAGTTTT
1 TCATTTAGTAAAATAGTTTT
3541 GGTCTTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.29, C:0.07, G:0.10, T:0.54
Consensus pattern (20 bp):
TCATTTAGTAAAATAGTTTT
Found at i:7020 original size:21 final size:20
Alignment explanation
Indices: 6996--7035 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
6986 GCAAGTCGCA
*
6996 TCATTTGGTCTAAAAAGTTTG
1 TCATTTGGT-AAAAAAGTTTG
*
7017 TCATTTTGTAAAAAAGTTT
1 TCATTTGGTAAAAAAGTTT
7036 TCGCCTTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (20 bp):
TCATTTGGTAAAAAAGTTTG
Found at i:12618 original size:20 final size:21
Alignment explanation
Indices: 12579--12619 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
12569 GGAAGTCACA
12579 TCATTTTGTCTAAAAAGTTTT
1 TCATTTTGTCTAAAAAGTTTT
*
12600 TCATTTTGT-TAACAAGTTTT
1 TCATTTTGTCTAAAAAGTTTT
12620 GGCCTTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.54
Consensus pattern (21 bp):
TCATTTTGTCTAAAAAGTTTT
Found at i:19062 original size:18 final size:17
Alignment explanation
Indices: 19032--19123 Score: 107
Period size: 17 Copynumber: 5.3 Consensus size: 17
19022 TAAATATATC
*
19032 TAAATAAAACTCTTAAT
1 TAAACAAAACTCTTAAT
19049 TAAACAATAACTC-TAACT
1 TAAACAA-AACTCTTAA-T
*
19067 TAAATAAAACTCTTAAT
1 TAAACAAAACTCTTAAT
19084 TAAACAAGAACTC-TAACT
1 TAAACAA-AACTCTTAA-T
*
19102 TAAATAAAACTCTTAAT
1 TAAACAAAACTCTTAAT
19119 TAAAC
1 TAAAC
19124 TAGAACTCTA
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
17 34 0.53
18 30 0.47
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.30
Consensus pattern (17 bp):
TAAACAAAACTCTTAAT
Found at i:19078 original size:35 final size:35
Alignment explanation
Indices: 19032--19136 Score: 192
Period size: 35 Copynumber: 3.0 Consensus size: 35
19022 TAAATATATC
*
19032 TAAATAAAACTCTTAATTAAACAATAACTCTAACT
1 TAAATAAAACTCTTAATTAAACAAGAACTCTAACT
19067 TAAATAAAACTCTTAATTAAACAAGAACTCTAACT
1 TAAATAAAACTCTTAATTAAACAAGAACTCTAACT
*
19102 TAAATAAAACTCTTAATTAAACTAGAACTCTAACT
1 TAAATAAAACTCTTAATTAAACAAGAACTCTAACT
19137 AATCTAAACA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.50, C:0.17, G:0.02, T:0.30
Consensus pattern (35 bp):
TAAATAAAACTCTTAATTAAACAAGAACTCTAACT
Found at i:19132 original size:18 final size:18
Alignment explanation
Indices: 19032--19132 Score: 108
Period size: 18 Copynumber: 5.8 Consensus size: 18
19022 TAAATATATC
19032 TAAA-TAAAACTCTTAAT
1 TAAACTAAAACTCTTAAT
19049 TAAAC-AATAACTC-TAACT
1 TAAACTAA-AACTCTTAA-T
19067 TAAA-TAAAACTCTTAAT
1 TAAACTAAAACTCTTAAT
19084 TAAAC-AAGAACTC-TAACT
1 TAAACTAA-AACTCTTAA-T
19102 TAAA-TAAAACTCTTAAT
1 TAAACTAAAACTCTTAAT
*
19119 TAAACTAGAACTCT
1 TAAACTAAAACTCT
19133 AACTAATCTA
Statistics
Matches: 72, Mismatches: 1, Indels: 21
0.77 0.01 0.22
Matches are distributed among these distances:
17 34 0.47
18 38 0.53
ACGTcount: A:0.50, C:0.17, G:0.02, T:0.31
Consensus pattern (18 bp):
TAAACTAAAACTCTTAAT
Found at i:20275 original size:216 final size:215
Alignment explanation
Indices: 19874--23793 Score: 3958
Period size: 216 Copynumber: 18.2 Consensus size: 215
19864 ACTCGTATCA
* * *
19874 ATTCCAT-TCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTATGTAAACAAGTTTTG
1 ATTCCATGT-TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * **
19938 ATCTTTGAATTAAAAACTTATTTACATGAGAATTGTGTCACTCTTGGTTCTTGGAAAAACTTCCG
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-
** * * * *
20003 AAATTGTGGAACTTTTACGAGTTCTTTTATAACTTCTGTTCCCTAAAGTATTCAAGACGATTCAA
129 AAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
20068 TCCTTTGAGCAATTTTTCGAAC
194 TCCTTTGAGCAATTTTTCGAAC
* * * *
20090 ATTCCATGTTCGGGAAGTCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAGTGTTAG
1 ATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * *
20155 CCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTCTTGGTTATTGGACGAATTTCCAA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
* * *
20220 ACTTGTCAAACTTTTACGAGTTCTTTTTTAAC-TCTGGTTCCTTACAGTGTTCAAGACGATCCAT
131 A-TTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GGTTCCTTAAAGTATTCAAGACGATCCAT
*
20284 TCCTTTGAGCAATTTTTGGAAC
194 TCCTTTGAGCAATTTTTCGAAC
* * * * *
20306 ATTCCATGCTCGGGAAATCACATCAATCGGTCT--A-A------CATTTTGTAATCAAGTTTTGG
1 ATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * * * *
20362 TGC-TTGTATTAAAAAACTTTTTTATGTGAGAATTGTTTCTCTCTTGGTTCTTTGATGAAATTCT
66 T-CTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-
* * * * * * * *
20426 GAAATTGACAAACATTTATGAGTACTTTTATAACTTCAGTTCATTAAAGTGTTCAAGACGATCCA
128 CAAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* *
20491 TTCCTTTTAGCAATTTTTCGACC
193 TTCCTTTGAGCAATTTTTCGAAC
* * * *
20514 ATTTCAT-TCTCGGAAAATCGCATCATTTGGCCTAAATAGTTTGTCATTTTGTAAACAGGTTTTG
1 ATTCCATGT-TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* ** * * * * * * *
20578 GTCTTTGAATTAAAAAGTTATTTATTTGAGAATTGTTTATTTCTTGGTTTTTCGATGAACTTTCG
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * *
20643 AATTAGTAAAACTTTGT-CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATACAAGACGATCCA
130 AATT-GTCAAACTTT-TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
*
20707 TTCCTTCGAGCAATTTTTCGAAC
193 TTCCTTTGAGCAATTTTTCGAAC
* * * * * * * *
20730 ATTCCACGCTCTGGAAATCACATCATTCGGCCTAAATAGTTTCTCATTTTGTAAACAAGTATTGG
1 ATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * * * * *
20795 CCTTTCAATTAAAAACTTATTTATGTGAGAATTGTATCTCTCTTGGTTCTTGAATGAACTTCTGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-CA
* * * * ** *
20860 AATTGACAAACATTTACTATTTCTTTTATAACTTCGGTTCAGTAAAGTATTCAAGTCGATCCATT
130 AATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
* * *
20925 CCTTCT-AGTAGTTTTTTGAAC
195 CCTT-TGAGCAATTTTTCGAAC
* * * *
20946 ATTCCAT-TCCCGGGAAATCGCATTATTTGTTCTAAATAGTTAT-TCATTTTGTAAACAAGATTT
1 ATTCCATGT-TCGGGAAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAAGTTTT
* * * * * * *
21009 GATCTTTGAATTAAAAAATTATTTGCGTGAGAATTGTGTCTCTCTTAGTTCTTGGGCAAACTTCT
64 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-
* * *
21074 GAAATTGTCGAACTTTTACGAGTTCTTTTATAACTTTC-GTTCCTTAAAGTATTCAAGATGATCC
128 CAAATTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCC
*
21138 AATCCTTTGAGCAATTTTTCGAAC
192 ATTCCTTTGAGCAATTTTTCGAAC
* * * * * *
21162 ATTCCATGCTCGGGAAGTCGCATTATTTGATCTAAAAAGTTTGTAATTTTGTAAACAAGTTTTGG
1 ATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * *
21227 CCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGATGAACTTCTGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-CA
* * * * * * * * *
21292 ACTTTTTAAACTTTTACAAGTTTTTTTTTAACATCGATTCCTTAAAGTGTTCAAGACGATCCATT
130 AATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT
*
21357 CCTTCGA-CTAATTTTTCGAAC
195 CCTTTGAGC-AATTTTTCGAAC
* * * *
21378 ATTCAATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA-ATAGTTTTG
1 ATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTG
* * * ** *
21442 CTCTTTGAATTAAAAACTTGTTTACGTGAGAATTGTTACTCTCTTGGTTCTTTTACGAACTTTCG
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCC
* * * * * *
21507 AAATTGACAAA-TATTTATGAGTACTTTTATAACTTTGGTTCATTAAAGTGTTCAAGACGATCCA
129 AAATTGTCAAACT-TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
*
21571 TTCCTTCT-AGCAGTTTTTCGAAC
193 TTCCTT-TGAGCAATTTTTCGAAC
* * *
21594 ATTCCAT-TCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTTGTCATTTTGTAAACAGGTATT
1 ATTCCATGT-TCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAAGTTTT
** * *
21658 GGTCTTTGAATTAAAAACTTATTTATTTGAGAAATGTTTCTCTCTTGGTT-TCTGAACGAACTTC
64 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAACTTC
* * * * * *
21722 CGAACTTTTCAAAC-TTTACCGAGTTCTTTTATAACTTAGATTTCTTAAAGTATTTAAGACGATC
128 C-AAATTGTCAAACTTTTA-CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
* *
21786 CATTCCTTCGAGCAATTTTCCGAAC
191 CATTCCTTTGAGCAATTTTTCGAAC
* ** * * * *
21811 ATTTCAT-TCTTTGGAAATCTCACCATTCGGTCTAAATAGTTTCTCATTTTGTAAACAAGTTTTG
1 ATTCCATGT-TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * * **
21875 GTCTTTCAATTAAAAGCTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGCACGAATTTTTG
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTTCC
* * ** * * *
21940 AAATTGACAAACTGTTATAAGTTATTTTATAACTTCGGTTCATTAAAGTATTCAAGATGATCCAT
129 AAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
22005 TCCTTCT-AGCAATTTTTC-AAC
194 TCCTT-TGAGCAATTTTTCGAAC
* * * * * * *
22026 ATTCTAAT-CTCGGGAAATCGCATCATATGGTCTAAATAGTTTTTCATTATGCAAACAAGTTTTT
1 ATTC-CATGTTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * *
22090 ATCTTTGAATTAAAAATTTATTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGAACTTCTA
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-C
* * * * *
22155 AAATTGTCGAACTTTTATGAGTTCTTTTATAAATTTGGTTCCTTAAAGTATTCAAGATGATCC-T
129 AAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
*
22219 ATCCTTCGAGCAATTTTTCGAAC
194 -TCCTTTGAGCAATTTTTCGAAC
* * * * *
22242 ATTCCATGCTCGGGTAGTCGTATCATTTGGTCTAAA-ATGTTTGTCATTTTGTAAACATGTTTTG
1 ATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAGTTTTG
** * * *
22306 ACCTTTGAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCTG
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-C
* * * * *
22371 AACA-TGTCAAACTTTTACGAGTTCTTTTTTAACTTTGATTCCTTAAAGTGTTCAAGACGATCAA
129 AA-ATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * *
22435 TTCCTTCGAGTAATTTTTTGAAC
193 TTCCTTTGAGCAATTTTTCGAAC
* * * ** * * *
22458 ATTCAACGCTCAAGAAACCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAA-ATAGTTTTG
1 ATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTG
* * ** *
22522 GTCTTTGAATTAAAAACTTGTTTACGTGAGAATTG-TT-TATCTAAGTTCTTTGACGAACTTCCG
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-
* * * * * * * *
22585 AAATTGACAAACATTTATGAGTACTTTTATAACTTCGGTTCATTAAAGTGTTCTAGATGATCCAT
129 AAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
*
22650 TCCTTCT-AGCAGTTTTTCGAAC
194 TCCTT-TGAGCAATTTTTCGAAC
* * * *
22672 ATTCCAT-TCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAGGTTTTA
1 ATTCCATGT-TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
** * * *
22736 GTCTTTGAATTAAAAACTTATTTATTTGAGAATCGTTTCTCTCTTGGTTTTTGGATGAACTTCCT
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-
* * ** * * * * * * *
22801 AACTAGTCAAACTTTGCCAAGTTC-TTTATAACTTTGATTCCTTAAAGTAATCAAGATGATTCAC
129 AAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
22865 TCCTTTGAGCAATTTTTCGAAC
194 TCCTTTGAGCAATTTTTCGAAC
* * * * *
22887 ATTCCATGCTCGGGAAATCGCATTATTCGATCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGG
1 ATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * * * * *
22952 TCTTTCAATTAAAAACTTATTTATGTTAGAATTGTTCCACTATTGGTTCATGGACGAACTTCCAA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
* * * * * * *
23017 TCTTGT-AGACATTTTACGAGTTCATTTATAACTTCGGTTGCTTAGAGTATTCAAGATGATCCAC
131 -ATTGTCAAAC-TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* *
23081 T-CTTTCGAGTAGTTTTTCGAAC
194 TCCTTT-GAGCAATTTTTCGAAC
* * ** * * * *
23103 ATTTCATGCTT-GAGAAATCGCATCATTCAGTCTAAATGGTTTTTCATTTTGTAATCAAGCTTTG
1 ATTCCATG-TTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* ** * * * *
23167 GTGTTTCTATTAAAAACTTATTTATC-TGAGAATTATTTCCCTCTTTGTTCTTGGATGAAC-TCC
65 GTCTTTGAATTAAAAACTTATTTA-CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
* * * * * * *
23230 TGAAATTGACAAACTTTTACTAGTTCTTTTATAACTTTGATTCCATAAAGTATTCAAGTCAATCC
129 --AAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* *
23295 ATTCCATCT-AGCAGTTTTTCGAAC
192 ATTCC-TTTGAGCAATTTTTCGAAC
* * * *
23319 ATTCCAT-TAAT-GAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAATTTGTAAACAAGATTT
1 ATTCCATGT--TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * *
23382 GATCTTTGAATTAAAAAATTACTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGGCGAACTTCT
64 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-
* * * *
23447 GAAATTGTCGAACTTTTACGTGTTCTTTTATAACATT-GGTTCCTTAAAGTATTCAAGATGATCC
128 CAAATTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCC
* * *
23511 AATCCTTCGAGCAAATTTTCGAAC
192 ATTCCTTTGAGCAATTTTTCGAAC
* * * **
23535 ATTCCATGTTCGGGTAAGTCGCATCATTTGGTCTAAA-AGGTTTGTCATTTCGTAAAAAAAATTT
1 ATTCCATGTTCGGG-AAATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAGTTTT
* * * *
23599 GGCCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCT
64 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
* * * *
23664 AAACTTGTCAAACTTTTACGAGTTCTTTTTTAACTTCGGCTCCTTAAAGTGTTCAAGGCGATCCA
129 AAA-TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* *
23729 TTCCTTCGAGTAATTTTTCGAAC
193 TTCCTTTGAGCAATTTTTCGAAC
* * ** * *
23752 ATTCAATGCTCAAGAAATCGCATCATTTGATTTAAATAGTTT
1 ATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
23794 TGGTCTTTGA
Statistics
Matches: 3055, Mismatches: 555, Indels: 188
0.80 0.15 0.05
Matches are distributed among these distances:
207 24 0.01
208 141 0.05
209 5 0.00
210 1 0.00
211 1 0.00
213 2 0.00
214 182 0.06
215 382 0.13
216 1906 0.62
217 408 0.13
218 3 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (215 bp):
ATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
ATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
CTTTGAGCAATTTTTCGAAC
Found at i:20998 original size:432 final size:431
Alignment explanation
Indices: 19874--25652 Score: 5942
Period size: 432 Copynumber: 13.5 Consensus size: 431
19864 ACTCGTATCA
* * * *
19874 ATTCCATTCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTATGTAAACAAGTTTTGA
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* * * ** *
19939 TCTTTGAATTAAAAACTTATTTACATGAGAATTGTGTCACTCTTGGTTCTTGGAAAAACTTCCGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
** * * ** * *
20004 AATTGTGGAACTTTTACGAGTTCTTTTATAACTTCTGTTCCCTAAAGTATTCAAGACGATTCAAT
131 AATTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATT
* * *
20069 CCTTTGAGCAATTTTTCGAACATTCCATGT-TCGGGAAGTCGCATCATTTGGTCTAAAAAGTTTG
196 CCTTCGAGCAATTTTTCGAACATTCCAT-TCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * *
20133 TCATTTTGTAAACAAGTGTTAGCCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTCT
260 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * *
20198 TGGTTATTGGACGAA-TTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTTTAAC-TCTGGTTCC
325 TGGTTCTTGGACGAACTTT-CGAA-TTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCC
* * * *
20261 TTACAGTGTTCAAGACGATCCATTCCTTTGAGCAATTTTTGGAAC
387 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * *
20306 ATTCCATGCTCGGGAAATCACATCAATCGGTCT--A-A------CATTTTGTAATCAAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* * * * * *
20362 TGC-TTGTATTAAAAAACTTTTTTATGTGAGAATTGTTTCTCTCTTGGTTCTTTGATGAAATTCT
66 T-CTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT
* * * * *
20426 GAAATTGACAAACATTTA-TGAGTACTTTTATAACTTCAGTTCATTAAAGTGTTCAAGACGATCC
129 GAAATTGTCAAACTTTTACT-AGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCC
** * * * *
20490 ATTCCTTTTAGCAATTTTTCGACCATTTCATTCTCGGAAAATCGCATCATTTGGCCTAAATAGTT
193 ATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * ** * *
20555 TGTCATTTTGTAAACAGGTTTTGGTCTTTGAATTAAAAAGTTATTTATTTGAGAATTGTTTATTT
258 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * *
20620 CTTGGTTTTTCGATGAACTTTCGAATTAGTAAAACTTTGT-CGAGTTCTTTTATAACTTCGATTC
323 CTTGGTTCTTGGACGAACTTTCGAATT-GTCAAACTTT-TACGAGTTCTTTTATAACTTCGATTC
*
20684 CTTAAAGTATACAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
386 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * * * * *
20730 ATTCCACGCTCTGGAAATCACATCATTCGGCCTAAATAGTTTCTCATTTTGTAAACAAGTATTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* * * * * *
20795 CCTTTCAATTAAAAACTTATTTATGTGAGAATTGTATCTCTCTTGGTTCTTGAATGAACTTCTGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
* * * * *
20860 AATTGACAAACATTTACTATTTCTTTTATAACTTCGGTTCAGTAAAGTATTCAAGTCGATCCATT
131 AATTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATT
* * * * * * *
20925 CCTTCTAGTAGTTTTTTGAACATTCCATTCCCGGGAAATCGCATTATTTGTTCTAAATAGTTAT-
196 CCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTT-TG
* * * * *
20989 TCATTTTGTAAACAAGATTTGATCTTTGAATTAAAAAATTATTTGCGTGAGAATTGTGTCTCTCT
260 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * *
21054 TAGTTCTTGGGCAAAC-TTCTGAAATTGTCGAACTTTTACGAGTTCTTTTATAACTTTCG-TTCC
325 TGGTTCTTGGACGAACTTTC-G-AATTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGATTCC
* * *
21117 TTAAAGTATTCAAGATGATCCAATCCTTTGAGCAATTTTTCGAAC
387 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * * * *
21162 ATTCCATGCTCGGGAAGTCGCATTATTTGATCTAAAAAGTTTGTAATTTTGTAAACAAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* * *
21227 CCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGATGAACTTCTGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
* * * * * * * * * *
21292 ACTTTTTAAACTTTTACAAGTTTTTTTTTAACATCGATTCCTTAAAGTGTTCAAGACGATCCATT
131 AATTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATT
* * * *
21357 CCTTCGA-CTAATTTTTCGAACATTCAATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTT
196 CCTTCGAGC-AATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * *
21421 TCATTTTGTAAA-ATAGTTTTGCTCTTTGAATTAAAAACTTGTTTACGTGAGAATTGTTACTCTC
260 TCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
** * * * * * *
21485 TTGGTTCTTTTACGAACTTTCGAAATTGACAAA-TATTTATGAGTACTTTTATAACTTTGGTTCA
324 TTGGTTCTTGGACGAACTTTCG-AATTGTCAAACT-TTTACGAGTTCTTTTATAACTTCGATTCC
* * *
21549 TTAAAGTGTTCAAGACGATCCATTCCTTCTAGCAGTTTTTCGAAC
387 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * *
21594 ATTCCATTCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTTGTCATTTTGTAAACAGGTATTG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTT-TCATTTTGTAAACAAGTTTTG
** * * *
21659 GTCTTTGAATTAAAAACTTATTTATTTGAGAAATGTTTCTCTCTTGGTT-TCTGAACGAACTTCC
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAACTTCT
* * * * * *
21723 GAACTTTTCAAAC-TTTACCGAGTTCTTTTATAACTTAGATTTC-TTAAAGTATTTAAGACGATC
129 GAAATTGTCAAACTTTTA-CTAGTTCTTTTATAACTTCG-GTTCATTAAAGTATTCAAGACGATC
* * ** * * *
21786 CATTCCTTCGAGCAATTTTCCGAACATTTCATTCTTTGGAAATCTCACCATTCGGTCTAAATAGT
192 CATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * *
21851 TTCTCATTTTGTAAACAAGTTTTGGTCTTTCAATTAAAAGCTTATTTACGTGAGAATTGTTTCTC
257 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * * * * ** * *
21916 TTTTGGTTCTTGCACGAATTTTTGAAATTGACAAACTGTTATAAGTTATTTTATAACTTCGGTTC
322 TCTTGGTTCTTGGACGAACTTTCG-AATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTC
* * *
21981 ATTAAAGTATTCAAGATGATCCATTCCTTCTAGCAATTTTTC-AAC
386 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * * *
22026 ATTCTAAT-CTCGGGAAATCGCATCATATGGTCTAAATAGTTTTTCATTATGCAAACAAGTTTTT
1 ATTC-CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTG
* * * *
22090 ATCTTTGAATTAAAAATTTATTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGAACTTCTA
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
* * * * *
22155 AAATTGTCGAACTTTTA-TGAGTTCTTTTATAAATTTGGTTCCTTAAAGTATTCAAGATGATCC-
130 AAATTGTCAAACTTTTACT-AGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCA
* * * *
22218 TATCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGTAGTCGTATCATTTGGTCTAAA-ATGT
194 T-TCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATA-GT
* ** *
22282 TTGTCATTTTGTAAACATGTTTTGACCTTTGAATTAAAAATTTATTTACGTGAGAATTGTTTCTC
257 TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * *
22347 TCTTGGTTGTTGGACGAAC-TTCTGAACATGTCAAACTTTTACGAGTTCTTTTTTAACTTTGATT
322 TCTTGGTTCTTGGACGAACTTTC-GAA-TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATT
* * * *
22411 CCTTAAAGTGTTCAAGACGATCAATTCCTTCGAGTAATTTTTTGAAC
385 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * ** * *
22458 ATTCAACGCTCAAGAAACCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAA-ATAGTTTTG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA-AGTTTTG
* * ** * *
22522 GTCTTTGAATTAAAAACTTGTTTACGTGAGAATTG-TT-TATCTAAGTTCTTTGACGAACTTCCG
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
* * * * * *
22585 AAATTGACAAACATTTA-TGAGTACTTTTATAACTTCGGTTCATTAAAGTGTTCTAGATGATCCA
130 AAATTGTCAAACTTTTACT-AGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCA
* * *
22649 TTCCTTCTAGCAGTTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
194 TTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * ** *
22714 GTCATTTTGTAAATAGGTTTTAGTCTTTGAATTAAAAACTTATTTATTTGAGAATCGTTTCTCTC
259 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * * * ** * *
22779 TTGGTTTTTGGATGAACTTCCTAACTAGTCAAACTTTGCCAAGTTC-TTTATAACTTTGATTCCT
324 TTGGTTCTTGGACGAACTTTCGAA-TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCT
* * * * *
22843 TAAAGTAATCAAGATGATTCACTCCTTTGAGCAATTTTTCGAAC
388 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * *
22887 ATTCCATGCTCGGGAAATCGCATTATTCGATCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* * * * * * * *
22952 TCTTTCAATTAAAAACTTATTTATGTTAGAATTGTTCCACTATTGGTTCATGGACGAACTTC-CA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
* * * * * *
23016 ATCTTGT-AGACATTTTACGAGTTCATTTATAACTTCGGTTGC-TTAGAGTATTCAAGATGATCC
131 A-ATTGTCAAAC-TTTTACTAGTTCTTTTATAACTTCGGTT-CATTAAAGTATTCAAGACGATCC
* * * * * * * * ** *
23079 ACTCTTTCGAGTAGTTTTTCGAACATTTCATGCTTGAGAAATCGCATCATTCAGTCTAAATGGTT
193 ATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * ** * *
23144 TTTCATTTTGTAATCAAGCTTTGGTGTTTCTATTAAAAACTTATTTATC-TGAGAATTATTTCCC
258 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA-CGTGAGAATTGTTTCTC
* * * * * *
23208 TCTTTGTTCTTGGATGAAC-TCCTGAAATTGACAAACTTTTACTAGTTCTTTTATAACTTTGATT
322 TCTTGGTTCTTGGACGAACTTTC-G-AATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATT
* * * * * *
23272 CCATAAAGTATTCAAGTCAATCCATTCCATCTAGCAGTTTTTCGAAC
385 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
** * * *
23319 ATTCCATTAAT-GAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAATTTGTAAACAAGATTTG
1 ATTCCA-TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTG
* * * * *
23383 ATCTTTGAATTAAAAAATTACTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGGCGAACTTCTG
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
* * *
23448 AAATTGTCGAACTTTTACGT-GTTCTTTTATAACATT-GGTTCCTTAAAGTATTCAAGATGATCC
130 AAATTGTCAAACTTTTAC-TAGTTCTTTTATAAC-TTCGGTTCATTAAAGTATTCAAGACGATCC
* * *
23511 AATCCTTCGAGCAAATTTTCGAACATTCCATGT-TCGGGTAAGTCGCATCATTTGGTCTAAA-AG
193 ATTCCTTCGAGCAATTTTTCGAACATTCCAT-TCTCGGG-AAATCGCATCATTTGGTCTAAATA-
* * ** * *
23574 GTTTGTCATTTCGTAAAAAAAATTTGGCCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTC
255 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * *
23639 TCTCTTGGTTGTTGGACGAAC-TTCTAAACTTGTCAAACTTTTACGAGTTCTTTTTTAACTTCGG
320 TCTCTTGGTTCTTGGACGAACTTTC-GAA-TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA
* * * *
23703 CTCCTTAAAGTGTTCAAGGCGATCCATTCCTTCGAGTAATTTTTCGAAC
383 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* ** *
23752 ATTCAATGCTCAAGAAATCGCATCA-----T-T---T-G------A--TT-TAAA-TAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* * * * *
23797 TCTTTGAATTAAAAACTTGTTTATGTGAGAATTATTTCTCTCTTGGTTCATT-GACAAACTTCCG
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACTTCTG
* * * * * * *
23861 AAATTGACAAACATTTA-TGAGTACTTTTATAACTTCGATTCATTATAGTGTTCAAGACGATTCA
130 AAATTGTCAAACTTTTACT-AGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCA
* * * * * *
23925 TTCCTTCTAGCAGTTTTTAGAACTTTCCATTCTCGGGAAAGCGCATTATTTGGTCTAAATAGTTT
194 TTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * ** *
23990 GTCATTTTGGAAACAGGTTTTGGTCTTTGAATTAAAAACTTATTTATTTGAGAATCGTTTCTCTC
259 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * * * * *
24055 TTGGTT-TCTAGACGAACTTCCAAACTCGTCAAACTTTGATGAGTTCTTTTATAACTTCAATTCC
324 TTGGTTCT-TGGACGAACTTTCGAA-TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCC
* * *
24119 TTAAAGTATTCAAGATGATTCATTCCTTCGAGTAATTTTTCGAAC
387 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * * * * *
24164 ATTCCACGCTCTGAAAATCGCATCACTCGGTCAAAATAGTTTCTT-ATTTTGTTAACAAGTTTTG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TTCATTTTGTAAACAAGTTTTG
* *
24228 GTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTA
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
* * ** * *
24293 AAATTGACAAACTTTTACAAGTTCTTTTATAACTTCGGTGGATCAAAGTATCCAAGACGATCCAT
130 AAATTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCAT
* * * * * *
24358 TCCTTCTAGTAGTTTTTCAAACATTCCATTCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTT
195 TCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * *
24423 TCATTTTGTAAAAAAGTTTTGATCTTTGAATTAAAAACTTATTTAAGTGAGAATTGTGTCTCTCT
260 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
** * * *
24488 TGGTTCTTGGACGAACTTCTAAAATTGTCGAACTTTTACAAGTTCTTTTATAAATTC-AGTTCAC
325 TGGTTCTTGGACGAACTT-TCGAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTC-C
* * * *
24552 -TAAAGTATTCAAGACGAACCTTTCCTTCTAGCAGTTTTTCGAAC
387 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* ** * *
24596 ATTCCATTCTCGATAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAATTTTGA
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
* *
24661 TCTTTGAAATTAAAAACTTATTTACGTGGGAATTGTGTCTCTCTTGGTTCTTGGACGAACTTCTG
66 TCTTTG-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
** * * *
24726 AAATTGTTGAACTTTTACGAGTTCTTTTATAACTT-TGTTTACTTAAAGTATTCAAGACGATCCA
130 AAATTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCA-TTAAAGTATTCAAGACGATCCA
* * * * * *
24790 ATCCTTCAAGCAATTTTTCTAACATTCCGTTCTCGAGAAGTCGCATCATTTGGTCTAAA-AGGTT
194 TTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATA-GTT
* * *
24854 TGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACATGAGAATTGTGTCTCT
258 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* ** * * * *
24919 ATTGGTTCTTGGACGAA-TTTCTGAAATTGTTGAACTTTTACGAGTTCTCTTATAACTTTGGTTA
323 CTTGGTTCTTGGACGAACTTTC-G-AATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTC
* * * *
24983 CTTAAAGTATTCAACACGATCCAATCCTTCGAGCAATTTTTCTAAT
386 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * *
25029 ATTCCGTGCTCGGGAAGTCGCATCATTTGGTCTATAA-GGTTTGTCATTTTGTAAACAAGTTTTG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTA-AATAGTTTTTCATTTTGTAAACAAGTTTTG
* * * * * *
25093 GGCTTTGAA-TAAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTGTTGGACAAATTTCC
65 GTCTTTGAATTAAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT
* * * * * * * *
25157 GAACTTGCCAAACCTTTACGAGTTCTTTTTTAACTTCGATTCCTTAAAGTATTCAAGATGATCCA
129 GAAATTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCA
* * * * * **
25222 TTCCTTCGAGTAATTTTTTGAACA-TCCAATGCTCGAGATATCAG-ATCATTTCATCTAAATAGT
194 TTCCTTCGAGCAATTTTTCGAACATTCC-ATTCTCGGGAAATC-GCATCATTTGGTCTAAATAGT
* * * *
25285 TTTTCATTTTGTAAA-ATAGTTTTGGTCTTCG-------AA-TTGTTTACGTGAGAATGGTTTCT
257 TTGTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * * * * *
25341 CTCTTCGTTCTTTGACGAACTTCCGAAATTGAT-AAACATTTATGAGTACTTCTATAACTTCGGT
321 CTCTTGGTTCTTGGACGAACTTTCG-AATTG-TCAAACTTTTACGAGTTCTTTTATAACTTCGAT
* * * * * *
25405 TCATTATAGTGTTCAAGACGATCCATTGCTTCTAGCAATTTTTCAAAC
384 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
*
25453 ATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
** * * * * *
25518 TCTTTGAATTAAAAACTTATTTATTTTAGAATTGTTTCTCTTTTGGTTTTTGGATGATCTT-TCG
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-G
* ** * * * *
25582 AACTTGTCAAACTTTGCCAAGTTCTTTTATAACTTCGATTCCTTCAAGTATTCAAGACGATCCAT
130 AAATTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCAT
25647 TCCTTC
195 TCCTTC
25653 ATGTAATTTT
Statistics
Matches: 4442, Mismatches: 776, Indels: 266
0.81 0.14 0.05
Matches are distributed among these distances:
411 2 0.00
412 191 0.04
413 138 0.03
414 6 0.00
415 2 0.00
417 2 0.00
421 1 0.00
422 1 0.00
423 31 0.01
424 590 0.13
425 18 0.00
426 1 0.00
427 2 0.00
428 2 0.00
429 136 0.03
430 241 0.05
431 538 0.12
432 1618 0.36
433 914 0.21
434 8 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (431 bp):
ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGG
TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
AATTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATT
CCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
GGTTCTTGGACGAACTTTCGAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAA
AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
Found at i:21331 original size:648 final size:647
Alignment explanation
Indices: 19874--25652 Score: 6026
Period size: 649 Copynumber: 9.0 Consensus size: 647
19864 ACTCGTATCA
* * * * *
19874 ATTCCATTCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTATGTAAACAAGTTTTGA
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * ** *
19939 TCTTTGAATTAAAAACTTATTTACATGAGAATTGTGTCACTCTTGGTTCTTGGAAAAACTTCCGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
*** * * *
20004 AATTGTGGAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCCTAAAGTATTCAAGACGATTCAA
131 AATTGACAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACGATCCAT
* * * *
20068 TCCTT-TGAGCAATTTTTCGAACATTCCATGTTCGGGAAGTCGCATCATTTGGTCTAAAAAGTTT
195 TCCTTCT-AGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * *
20132 GTCATTTTGTAAACAAGTGTTAGCCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTC
259 TTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * * *
20197 TTGGTTATTGGACGAATTTC-CAAACTTGTCAAACTTTTACGAGTTCTTTTTTAAC-TCTGGTTC
324 TTGGTTCTTGGACGAACTTCTGAAA-TTGTCAAACTTTTACTAGTTCTTTTATAACTTC-GGTTC
* * * * *
20260 CTTACAGTGTTCAAGACGATCCATTCCTT-TGAGCAATTTTTGGAACATTCCATGCTCGGGAAAT
387 CTTAAAGTATTCAAGTCGATCCATTCCTTCT-AGCAATTTTTCGAACATTCCATTCTCGGGAAAT
* * * * *
20324 CACATCAATCGGTCT--A-A------CATTTTGTAATCAAGTTTTGGTGC-TTGTATTAAAAAAC
451 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTTTGAATT-AAAAAC
* * * * * * *
20379 TTTTTTATGTGAGAATTGTTTCTCTCTTGGTTCTTTGATGAAATTCTGAAATTGACAAACATTTA
514 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAATTGTCAAACTTTTA
* * * * **
20444 TGAGTACTTTTATAACTTCAGTTCATTAAAGTGTTCAAGACGATCCATTCCTTTTAGCAATTTTT
579 CGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
*
20509 CGACC
643 CGAAC
* * * * *
20514 ATTTCATTCTCGGAAAATCGCATCATTTGGCCTAAATAGTTTGTCATTTTGTAAACAGGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* ** * * * * *
20579 TCTTTGAATTAAAAAGTTATTTATTTGAGAATTGTTTATTTCTTGGTTTTTCGATGAACTT-TCG
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-G
*
20643 -AATTAGTA-AAACTTTGT-CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATACAAGACGATC
130 AAATT-G-ACAAACTTT-TACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATC
* * * * *
20705 CATTCCTTCGAGCAATTTTTCGAACATTCCACGCTCTG-GAAATCACATCATTCGGCCTAAATAG
192 CATTCCTTCTAGCAATTTTTCGAACATTCCATGCTC-GAGAAATCGCATCATTTGGTCTAAATAG
* * * * * *
20769 TTTCTCATTTTGTAAACAAGTATTGGCCTTTCAATTAAAAACTTATTTATGTGAGAATTGTATCT
256 TTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * *
20834 CTCTTGGTTCTTGAATGAACTTCTGAAATTGACAAACATTTACTATTTCTTTTATAACTTCGGTT
321 CTCTTGGTTCTTGGACGAACTTCTGAAATTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTT
** * * * *
20899 CAGTAAAGTATTCAAGTCGATCCATTCCTTCTAGTAGTTTTTTGAACATTCCATTCCCGGGAAAT
386 CCTTAAAGTATTCAAGTCGATCCATTCCTTCTAGCAATTTTTCGAACATTCCATTCTCGGGAAAT
* * * * *
20964 CGCATTATTTGTTCTAAATAGTTAT-TCATTTTGTAAACAAGATTTGATCTTTGAATTAAAAAAT
451 CGCATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * * * * *
21028 TATTTGCGTGAGAATTGTGTCTCTCTTAGTTCTTGGGCAAACTTCTGAAATTGTCGAACTTTTAC
515 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAATTGTCAAACTTTTAC
* * *
21093 GAGTTCTTTTATAACTTTCGTTCCTTAAAGTATTCAAGATGATCCAATCCTTTGAGCAATTTTTC
580 GAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
21158 GAAC
644 GAAC
* * * * *
21162 ATTCCATGCTCGGGAAGTCGCATTATTTGATCTAAAAAGTTTGTAATTTTGTAAACAAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * *
21227 CCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGATGAACTTCTGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
* *** * * * * *
21292 ACTTTTTAAACTTTTACAAGTTTTTTTTTAACATCGATTCCTTAAAGTGTTCAAGACGATCCATT
131 AATTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT
* *
21357 CCTTCGA-CTAATTTTTCGAACATTCAATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTT
196 CCTTCTAGC-AATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTT
* * *
21421 TCATTTTGTAAA-ATAGTTTTGCTCTTTGAATTAAAAACTTGTTTACGTGAGAATTGTTACTCTC
260 TCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
** * * *
21485 TTGGTTCTTTTACGAACTT-TCGAAATTGACAAA-TATTTA-TGAGTACTTTTATAACTTTGGTT
324 TTGGTTCTTGGACGAACTTCT-GAAATTGTCAAACT-TTTACT-AGTTCTTTTATAACTTCGGTT
* * * *
21547 CATTAAAGTGTTCAAGACGATCCATTCCTTCTAGCAGTTTTTCGAACATTCCATTCTCGGGAAAT
386 CCTTAAAGTATTCAAGTCGATCCATTCCTTCTAGCAATTTTTCGAACATTCCATTCTCGGGAAAT
* * *
21612 TGCATCATTTGGTCTAAATAGTTTTGTCATTTTGTAAACAGGTATTGGTCTTTGAATTAAAAACT
451 CGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
** * * * * *
21677 TATTTATTTGAGAAATGTTTCTCTCTTGGTT-TCTGAACGAACTTCCGAACTTTTCAAAC-TTTA
515 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAACTTCTGAAATTGTCAAACTTTTA
* * *
21740 CCGAGTTCTTTTATAACTTAGATTTCTTAAAGTATTTAAGACGATCCATTCCTTCGAGCAATTTT
579 -CGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
*
21805 CCGAAC
642 TCGAAC
* * ** * * * *
21811 ATTTCATTCTTTGGAAATCTCACCATTCGGTCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * * * *
21876 TCTTTCAATTAAAAGCTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGCACGAATTTTTGA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
* ** * * * *
21941 AATTGACAAACTGTTATAAGTTATTTTATAACTTCGGTTCATTAAAGTATTCAAGATGATCCATT
131 AATTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT
* * *
22006 CCTTCTAGCAATTTTTC-AACATTCTAAT-CTCGGGAAATCGCATCATATGGTCTAAATAGTTTT
196 CCTTCTAGCAATTTTTCGAACATTC-CATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTT
* * ** * *
22069 TCATTATGCAAACAAGTTTTTATCTTTGAATTAAAAATTTATTTACGTGAGAATTGTGTCTCTCT
260 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * *
22134 TGGTTCTTGGACGAACTTCTAAAATTGTCGAACTTTTA-TGAGTTCTTTTATAAATTTGGTTCCT
325 TGGTTCTTGGACGAACTTCTGAAATTGTCAAACTTTTACT-AGTTCTTTTATAACTTCGGTTCCT
* * * *
22198 TAAAGTATTCAAGAT-GATCC-TATCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGTAGTC
389 TAAAGTATTCAAG-TCGATCCAT-TCCTTCTAGCAATTTTTCGAACATTCCATTCTCGGGAAATC
* * ** *
22261 GTATCATTTGGTCTAAA-ATGTTTGTCATTTTGTAAACATGTTTTGACCTTTGAATTAAAAATTT
452 GCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
*
22325 ATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCTGAACA-TGTCAAACTTTTAC
516 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA-ATTGTCAAACTTTTAC
* * * * * *
22389 GAGTTCTTTTTTAACTTTGATTCCTTAAAGTGTTCAAGACGATCAATTCCTTCGAGTAATTTTTT
580 GAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
22454 GAAC
644 GAAC
* * ** * * *
22458 ATTCAACGCTCAAGAAACCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAA-ATAGTTTTG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTG
* * ** * *
22522 GTCTTTGAATTAAAAACTTGTTTACGTGAGAATTG-TT-TATCTAAGTTCTTTGACGAACTTCCG
65 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
* * * * * * * *
22585 AAATTGACAAACATTTATGAGTACTTTTATAACTTCGGTTCATTAAAGTGTTCTAGATGATCCAT
130 AAATTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCAT
* * *
22650 TCCTTCTAGCAGTTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTG
195 TCCTTCTAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTT
* * * ** *
22715 TCATTTTGTAAATAGGTTTTAGTCTTTGAATTAAAAACTTATTTATTTGAGAATCGTTTCTCTCT
260 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * ** * * *
22780 TGGTTTTTGGATGAACTTCCT-AACTAGTCAAACTTTGCCAAGTTC-TTTATAACTTTGATTCCT
325 TGGTTCTTGGACGAACTT-CTGAAATTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCCT
* * * *
22843 TAAAGTAATCAAGAT-GATTCACTCCTT-TGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
389 TAAAGTATTCAAG-TCGATCCATTCCTTCT-AGCAATTTTTCGAACATTCCATTCTCGGGAAATC
* * * * *
22906 GCATTATTCGATCTAAATAGTTTCTCATTTTGTAAACAAGTTTTGGTCTTTCAATTAAAAACTTA
452 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * * * *
22971 TTTATGTTAGAATTGTTCCACTATTGGTTCATGGACGAACTTC-CAATCTTGT-AGACATTTTAC
517 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAA-ATTGTCAAAC-TTTTAC
* * * * * * * *
23034 GAGTTCATTTATAACTTCGGTTGCTTAGAGTATTCAAGATGATCCACTCTTTCGAGTAGTTTTTC
580 GAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
23099 GAAC
644 GAAC
* * * ** * * * *
23103 ATTTCATGCTTGAGAAATCGCATCATTCAGTCTAAATGGTTTTTCATTTTGTAATCAAGCTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* ** * * * * *
23168 TGTTTCTATTAAAAACTTATTTATC-TGAGAATTATTTCCCTCTTTGTTCTTGGATGAACTCCTG
66 TCTTTGAATTAAAAACTTATTTA-CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG
* * * * *
23232 AAATTGACAAACTTTTACTAGTTCTTTTATAACTTTGATTCCATAAAGTATTCAAGTCAATCCAT
130 AAATTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCAT
* * **
23297 TCCATCTAGCAGTTTTTCGAACATTCCATTAAT-GAGAAATCGCATCATTTGGTCTAAATAGTTT
195 TCCTTCTAGCAATTTTTCGAACATTCCA-TGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * *
23361 TTCAATTTGTAAACAAGATTTGATCTTTGAATTAAAAAATTACTTACGTGAGAATTGTGTCTCTC
259 TTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* *
23426 TTGGTTCTTGGGCGAACTTCTGAAATTGTCGAACTTTTACGT-GTTCTTTTATAACATT-GGTTC
324 TTGGTTCTTGGACGAACTTCTGAAATTGTCAAACTTTTAC-TAGTTCTTTTATAAC-TTCGGTTC
* * *
23489 CTTAAAGTATTCAAGAT-GATCCAATCCTTCGAGCAAATTTTCGAACATTCCATGT-TCGGGTAA
387 CTTAAAGTATTCAAG-TCGATCCATTCCTTCTAGCAATTTTTCGAACATTCCAT-TCTCGGG-AA
* * * ** *
23552 GTCGCATCATTTGGTCTAAA-AGGTTTGTCATTTCGTAAAAAAAATTTGGCCTTTGAATTAAAAA
449 ATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* *
23616 CTTATTTACGTCAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCT-AAACTTGTCAAACTTT
513 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAA-TTGTCAAACTTT
* * * * *
23680 TACGAGTTCTTTTTTAACTTCGGCTCCTTAAAGTGTTCAAGGCGATCCATTCCTTCGAGTAATTT
577 TACGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
23745 TTCGAAC
641 TTCGAAC
* ** *
23752 ATTCAATGCTCAAGAAATCG---CA-----TC-----A-TTTG--A--TT-TAAA-TAGTTTTGG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * * *
23797 TCTTTGAATTAAAAACTTGTTTATGTGAGAATTATTTCTCTCTTGGTTCATT-GACAAACTTCCG
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACTTCTG
* * * * * * *
23861 AAATTGACAAACATTTATGAGTACTTTTATAACTTCGATTCATTATAGTGTTCAAGACGATTCAT
130 AAATTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCAT
* * * * * * * *
23926 TCCTTCTAGCAGTTTTTAGAACTTTCCATTCTCGGGAAAGCGCATTATTTGGTCTAAATAGTTTG
195 TCCTTCTAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTT
* * ** *
23991 TCATTTTGGAAACAGGTTTTGGTCTTTGAATTAAAAACTTATTTATTTGAGAATCGTTTCTCTCT
260 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * * * **
24056 TGGTT-TCTAGACGAACTTC-CAAACTCGTCAAACTTTGA-TGAGTTCTTTTATAACTTCAATTC
325 TGGTTCT-TGGACGAACTTCTGAAA-TTGTCAAACTTTTACT-AGTTCTTTTATAACTTCGGTTC
* * * ** * *
24118 CTTAAAGTATTCAAGAT-GATTCATTCCTTCGAGTAATTTTTCGAACATTCCACGCTCTGAAAAT
387 CTTAAAGTATTCAAG-TCGATCCATTCCTTCTAGCAATTTTTCGAACATTCCATTCTCGGGAAAT
* * * * * * *
24182 CGCATCACTCGGTCAAAATAGTTTCTTATTTTGTTAACAAGTTTTGGTCTTTCAATTAAAAACTT
451 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * *
24247 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAAATTGACAAACTTTTACA
516 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAATTGTCAAACTTTTACG
*** * * * * * *
24312 AGTTCTTTTATAACTTCGGTGGATCAAAGTATCCAAGACGATCCATTCCTTCTAGTAGTTTTTCA
581 AGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
24377 AAC
645 AAC
* * * * *
24380 ATTCCATTCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAGTTTTGA
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * *
24445 TCTTTGAATTAAAAACTTATTTAAGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGAACTTCTAA
66 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
* * * * * *
24510 AATTGTCGAACTTTTACAAGTTCTTTTATAAATTC-AGTTCAC-TAAAGTATTCAAGACGAACCT
131 AATTGACAAACTTTTACGAGTTCTTTTATAACTTCGA-TTC-CTTAAAGTATTCAAGACGATCCA
* * *
24573 TTCCTTCTAGCAGTTTTTCGAACATTCCATTCTCGATAAATCGCATCATTTGGTCTAAATAGTTT
194 TTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
24638 TTCATTTTGTAAACAAATTTTGATCTTTGAAATTAAAAACTTATTTACGTGGGAATTGTGTCTCT
259 TTCATTTTGTAAACAAGTTTTGGTCTTTG-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
** * * * *
24703 CTTGGTTCTTGGACGAACTTCTGAAATTGTTGAACTTTTACGAGTTCTTTTATAACTTTGTTTAC
323 CTTGGTTCTTGGACGAACTTCTGAAATTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCC
* * * * * * *
24768 TTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCTAACATTCCGTTCTCGAGAAGTCG
388 TTAAAGTATTCAAGTCGATCCATTCCTTCTAGCAATTTTTCGAACATTCCATTCTCGGGAAATCG
*
24833 CATCATTTGGTCTAAA-AGGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
453 CATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * **
24897 TTTACATGAGAATTGTGTCTCTATTGGTTCTTGGACGAATTTCTGAAATTGTTGAACTTTTACGA
517 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAATTGTCAAACTTTTACGA
* * * * * *
24962 GTTCTCTTATAACTTTGGTTACTTAAAGTATTCAACACGATCCAATCCTTCGAGCAATTTTTCTA
582 GTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
*
25027 AT
646 AC
* * *
25029 ATTCCGTGCTCGGGAAGTCGCATCATTTGGTCTATAA-GGTTTGTCATTTTGTAAACAAGTTTTG
1 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTA-AATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * * *
25093 GGCTTTGAA-TAAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTGTTGGACAAATTTCC
65 GTCTTTGAATTAAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT
* * * * *
25157 GAACTTGCCAAACCTTTACGAGTTCTTTTTTAACTTCGATTCCTTAAAGTATTCAAGATGATCCA
129 GAAATTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCA
* * * * **
25222 TTCCTTCGAGTAATTTTTTGAACA-TCCAATGCTCGAGATATCAG-ATCATTTCATCTAAATAGT
194 TTCCTTCTAGCAATTTTTCGAACATTCC-ATGCTCGAGAAATC-GCATCATTTGGTCTAAATAGT
* * *
25285 TTTTCATTTTGTAAA-ATAGTTTTGGTCTTCG-------AA-TTGTTTACGTGAGAATGGTTTCT
257 TTTTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * * *
25341 CTCTTCGTTCTTTGACGAACTTCCGAAATTGAT-AAACATTTA-TGAGTACTTCTATAACTTCGG
321 CTCTTGGTTCTTGGACGAACTTCTGAAATTG-TCAAACTTTTACT-AGTTCTTTTATAACTTCGG
* * * * * *
25404 TTCATTATAGTGTTCAAGACGATCCATTGCTTCTAGCAATTTTTCAAACATTCCATTCTCGGGAA
384 TTCCTTAAAGTATTCAAGTCGATCCATTCCTTCTAGCAATTTTTCGAACATTCCATTCTCGGGAA
*
25469 ATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAC
449 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAC
** * * * * * * *
25534 TTATTTATTTTAGAATTGTTTCTCTTTTGGTTTTTGGATGATCTT-TCGAACTTGTCAAACTTTG
514 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAAATTGTCAAACTTTT
* * *
25598 CCAAGTTCTTTTATAACTTCGATTCCTTCAAGTATTCAAGACGATCCATTCCTTC
578 ACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTC
25653 ATGTAATTTT
Statistics
Matches: 4275, Mismatches: 737, Indels: 254
0.81 0.14 0.05
Matches are distributed among these distances:
627 1 0.00
628 190 0.04
629 313 0.07
630 5 0.00
631 4 0.00
633 1 0.00
635 3 0.00
636 2 0.00
639 9 0.00
640 652 0.15
641 15 0.00
642 4 0.00
643 1 0.00
644 6 0.00
645 398 0.09
646 141 0.03
647 459 0.11
648 1011 0.24
649 1046 0.24
650 14 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (647 bp):
ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGA
AATTGACAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT
CCTTCTAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTT
CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
GGTTCTTGGACGAACTTCTGAAATTGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCCTTA
AAGTATTCAAGTCGATCCATTCCTTCTAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCAT
CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAATTGTCAAACTTTTACGAGTTC
TTTTATAACTTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
Found at i:21424 original size:21 final size:20
Alignment explanation
Indices: 21400--21440 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
21390 AGAAATCGCA
*
21400 TCATTTGGTCTAAATAGTTTT
1 TCATTTGGT-AAAATAGTTTT
*
21421 TCATTTTGTAAAATAGTTTT
1 TCATTTGGTAAAATAGTTTT
21441 GCTCTTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.27, C:0.07, G:0.12, T:0.54
Consensus pattern (20 bp):
TCATTTGGTAAAATAGTTTT
Found at i:22504 original size:21 final size:20
Alignment explanation
Indices: 22480--22520 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22470 AGAAACCGCA
*
22480 TCATTTAGTCTAAATAGTTTT
1 TCATTTAGT-AAAATAGTTTT
*
22501 TCATTTTGTAAAATAGTTTT
1 TCATTTAGTAAAATAGTTTT
22521 GGTCTTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.29, C:0.07, G:0.10, T:0.54
Consensus pattern (20 bp):
TCATTTAGTAAAATAGTTTT
Found at i:23986 original size:196 final size:196
Alignment explanation
Indices: 23596--23989 Score: 468
Period size: 196 Copynumber: 2.0 Consensus size: 196
23586 GTAAAAAAAA
* * *
23596 TTTGGCCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT
1 TTTGGCCTTTGAATTAAAAACTTATTTACGTCAGAATTATTTCTCTCTTGGTTATTGGACAAACT
* * * * * * * *
23661 TCTAAACTTGTCAAACTTTTACGAGTTCTTTTTTAACTTCGGCTCCTTAAAGTGTTCAAGGCGAT
66 TCGAAACTTGACAAACATTTACGAGTACTTTTATAACTTCGACTCATTAAAGTGTTCAAGACGAT
* * * *
23726 CCATTCCTTCGAGTAATTTTTCGAACATTCAATGCTCAAGAAATCGCATCATTTGATTTAAATAG
131 CCATTCCTTCGAGCAATTTTTAGAACATTCAATGCTCAAGAAAGCGCATCATTTGATCTAAATAG
23791 T
196 T
* * * *
23792 TTTGGTCTTTGAATTAAAAACTTGTTTATGTGAGAATTATTTCTCTCTTGGTTCATT-GACAAAC
1 TTTGGCCTTTGAATTAAAAACTTATTTACGTCAGAATTATTTCTCTCTTGGTT-ATTGGACAAAC
* * *
23856 TTCCGAAA-TTGACAAACATTTATGAGTACTTTTATAACTTCGATTCATTATAGTGTTCAAGACG
65 TT-CGAAACTTGACAAACATTTACGAGTACTTTTATAACTTCGACTCATTAAAGTGTTCAAGACG
* * * * * * ** * *
23920 ATTCATTCCTTCTAGCAGTTTTTAGAACTTTCCATTCTCGGGAAAGCGCATTATTTGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTAGAACATTCAATGCTCAAGAAAGCGCATCATTTGATCTAAAT
23985 AGT
194 AGT
23988 TT
1 TT
23990 GTCATTTTGG
Statistics
Matches: 164, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
196 158 0.96
197 6 0.04
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (196 bp):
TTTGGCCTTTGAATTAAAAACTTATTTACGTCAGAATTATTTCTCTCTTGGTTATTGGACAAACT
TCGAAACTTGACAAACATTTACGAGTACTTTTATAACTTCGACTCATTAAAGTGTTCAAGACGAT
CCATTCCTTCGAGCAATTTTTAGAACATTCAATGCTCAAGAAAGCGCATCATTTGATCTAAATAG
T
Found at i:24203 original size:216 final size:215
Alignment explanation
Indices: 23789--25652 Score: 1965
Period size: 216 Copynumber: 8.7 Consensus size: 215
23779 TGATTTAAAT
* * * *
23789 AGTTTTGGTCTTTGAATTAAAAACTTGTTTATGTGAGAATTATTTCTCTCTTGGTTCATT-GACA
1 AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACG
* * * * * * *
23853 AACTTCCGAAATTGACAAACATTTATGAGTACTTTTATAACTTCGATTCATTATAGTGTTCAAGA
65 AACTTCC-AAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
* * * * * * * *
23918 CGATTCATTCCTTCTAGCAGTTTTTAGAACTTTCCATTCTCGGGAAAGCGCATTATTTGGTCTAA
129 CGATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAA
* *
23983 ATAGTTTGTCATTTTGGAAACA
194 ATAGTTTTTCATTTTGTAAACA
* ** * *
24005 GGTTTTGGTCTTTGAATTAAAAACTTATTTATTTGAGAATCGTTTCTCTCTTGGTT-TCTAGACG
1 AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACG
* * * *
24069 AACTTCCAAACTCGTCAAACTTTGATGAGTTCTTTTATAACTTCAATTCCTTAAAGTATTCAAGA
65 AACTTCCAAA-TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
* * * * * * * * *
24134 TGATTCATTCCTTCGAGTAATTTTTCGAACATTCCACGCTCTGAAAATCGCATCACTCGGTCAAA
129 CGATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAA
*
24199 ATAGTTTCTT-ATTTTGTTAACA
194 ATAGTTT-TTCATTTTGTAAACA
*
24221 AGTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
1 AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * * * *** * *
24286 ACTTCTAAAATTGACAAACTTTTACAAGTTCTTTTATAACTTCGGTGGATCAAAGTATCCAAGAC
66 ACTTC-CAAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC
* * * * * *
24351 GATCCATTCCTTCTAGTAGTTTTTCAAACATTCCATTCTTGGGAAATCGCATCATTTGGTCTAAA
130 GATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAA
*
24416 TAGTTTTTCATTTTGTAAAAA
195 TAGTTTTTCATTTTGTAAACA
* * *
24437 AGTTTTGATCTTTGAATTAAAAACTTATTTAAGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGA
1 AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * * *
24502 ACTTCTAAAATTGTCGAACTTTTACAAGTTCTTTTATAAATTC-AGTTCAC-TAAAGTATTCAAG
66 ACTTC-CAAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTC-CTTAAAGTATTCAAG
* * * *
24565 ACGAACCTTTCCTTCTAGCAGTTTTTCGAACATTCCATTCTC-GATAAATCGCATCATTTGGTCT
128 ACGATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGGA-AAATCGCATCATTTGGTCT
24629 AAATAGTTTTTCATTTTGTAAACA
192 AAATAGTTTTTCATTTTGTAAACA
* * * *
24653 AATTTTGATCTTTGAAATTAAAAACTTATTTACGTGGGAATTGTGTCTCTCTTGGTTCTTGGACG
1 AGTTTTGGTCTTTG-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* ** * * *
24718 AACTTCTGAAATTGTTGAACTTTTACGAGTTCTTTTATAACTTTGTTTACTTAAAGTATTCAAGA
65 AACTTC-CAAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
* * * * * *
24783 CGATCCAATCCTTCAAGCAATTTTTCTAACATTCCGTTCTC-GAGAAGTCGCATCATTTGGTCTA
129 CGATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGGA-AAATCGCATCATTTGGTCTA
*
24847 AA-AGGTTTGTCATTTTGTAAACA
193 AATA-GTTTTTCATTTTGTAAACA
* * * *
24870 AGTTTTGGCCTTTGAATTAAAAACTTATTTACATGAGAATTGTGTCTCTATTGGTTCTTGGACGA
1 AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * ** * * * * *
24935 ATTTCTGAAATTGTTGAACTTTTACGAGTTCTCTTATAACTTTGGTTACTTAAAGTATTCAACAC
66 ACTTC-CAAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC
* * * * * * *
25000 GATCCAATCCTTCGAGCAATTTTTCTAATATTCCGTGCTCGGGAAGTCGCATCATTTGGTCTATA
130 GATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTA-A
* *
25065 A-GGTTTGTCATTTTGTAAACA
194 ATAGTTTTTCATTTTGTAAACA
* * * *
25086 AGTTTTGGGCTTTGAA-TAAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTGTTGGACA
1 AGTTTTGGTCTTTGAATTAAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * * *
25150 AATTTCCGAACTTGCCAAACCTTTACGAGTTCTTTTTTAACTTCGATTCCTTAAAGTATTCAAGA
65 AACTTCC-AAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
* * * * * **
25215 TGATCCATTCCTTCGAGTAATTTTTTGAACA-TCCAATGCTC-GAGATATCAG-ATCATTTCATC
129 CGATCCATTCCTTCTAGCAATTTTTCGAACATTCC-ATGCTCGGA-AAATC-GCATCATTTGGTC
25277 TAAATAGTTTTTCATTTTGTAAA-A
191 TAAATAGTTTTTCATTTTGTAAACA
* * * * *
25301 TAGTTTTGGTCTTCG-------AA-TTGTTTACGTGAGAATGGTTTCTCTCTTCGTTCTTTGACG
1 -AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * * * * * *
25358 AACTTCCGAAATTGAT-AAACATTTATGAGTACTTCTATAACTTCGGTTCATTATAGTGTTCAAG
65 AACTTCC-AAATTG-TCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAG
* * * *
25422 ACGATCCATTGCTTCTAGCAATTTTTCAAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTA
128 ACGATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTA
25487 AATAGTTTTTCATTTTGTAAACA
193 AATAGTTTTTCATTTTGTAAACA
** * * * *
25510 AGTTTTGGTCTTTGAATTAAAAACTTATTTATTTTAGAATTGTTTCTCTTTTGGTTTTTGGATGA
1 AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * * ** * *
25575 TCTTTCGAACTTGTCAAACTTTGCCAAGTTCTTTTATAACTTCGATTCCTTCAAGTATTCAAGAC
66 AC-TTCCAAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC
25640 GATCCATTCCTTC
130 GATCCATTCCTTC
25653 ATGTAATTTT
Statistics
Matches: 1396, Mismatches: 214, Indels: 76
0.83 0.13 0.05
Matches are distributed among these distances:
207 1 0.00
208 164 0.12
209 5 0.00
210 2 0.00
214 1 0.00
215 23 0.02
216 999 0.72
217 201 0.14
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (215 bp):
AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
ACTTCCAAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
ATCCATTCCTTCTAGCAATTTTTCGAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAAT
AGTTTTTCATTTTGTAAACA
Done.