genome.fa.s14300.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014300.1 Kokia drynarioides strain JFW-HI SEQ_129336, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42321

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4892--4925	18	1.9	17	88	5	50	64	0	0	35	0.94
7306--7385	25	3.2	25	72	13	74	45	2	1	51	1.22
7785--7864	25	3.2	25	72	13	74	45	2	1	51	1.22
11262--11356	17	5.5	17	83	2	118	35	2	4	57	1.30
11262--11356	35	2.8	34	80	3	118	35	2	4	57	1.30
11949--11983	3	11.0	3	88	11	52	65	0	0	34	0.93
13098--13416	29	11.0	28	69	15	152	34	22	4	39	1.73
13095--13402	58	5.3	58	76	10	263	34	23	4	38	1.74
13098--13417	59	5.5	57	76	9	238	34	22	4	39	1.73
13161--13413	88	2.9	86	70	14	212	33	21	4	41	1.73
13341--13432	29	3.1	29	84	6	105	38	15	5	41	1.70
13429--13490	29	2.1	31	87	6	92	37	27	9	25	1.87
14850--14901	22	2.5	21	87	12	72	69	3	0	26	1.06
14850--14905	29	1.9	29	82	13	71	69	3	0	26	1.04
14863--14906	14	3.2	13	81	12	52	68	4	0	27	1.09
16425--16566	68	2.1	68	100	0	284	28	14	21	35	1.93
17827--17864	20	1.9	20	84	10	51	55	7	0	36	1.29
18906--18942	19	1.9	19	94	0	65	35	10	2	51	1.51
20204--20499	146	2.0	147	83	5	368	25	7	24	42	1.81
22445--22513	30	2.5	27	82	13	86	31	13	28	26	1.93
22459--22519	30	2.0	30	100	0	122	29	13	26	31	1.93
26979--27036	28	2.0	29	83	3	73	48	1	6	43	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27080--27105	7	3.7	7	100	0	52	61	0	0	38	0.96
31909--31991	39	2.1	39	86	0	112	26	2	53	18	1.57
31946--32567	66	9.6	65	81	8	707	23	4	46	24	1.72
32527--32603	36	2.1	36	95	0	136	27	2	53	16	1.57
32461--32669	102	2.0	102	88	3	314	24	3	48	23	1.66
32543--32600	18	3.2	18	67	0	53	29	1	51	17	1.55
32420--32734	168	1.9	169	88	2	481	23	4	46	24	1.71
32563--32748	66	2.8	65	80	7	212	23	3	46	25	1.69
34981--35155	96	1.8	97	81	6	221	38	13	16	31	1.87
35366--35569	29	6.9	29	74	11	173	39	3	24	32	1.72
35365--35569	58	3.5	59	78	5	218	40	3	24	32	1.72
36103--36132	15	2.0	15	100	0	60	66	20	6	6	1.38
36695--36730	15	2.3	16	90	4	56	41	2	0	55	1.14
41499--41561	19	3.3	19	86	8	76	34	9	1	53	1.43
41911--41940	15	2.0	15	93	0	51	0	23	43	33	1.54
41997--42279	93	2.8	105	81	11	292	26	4	43	24	1.74
42100--42321	93	2.4	93	96	0	399	28	4	42	25	1.73

Tables:   1

The End!