Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014301.1 Kokia drynarioides strain JFW-HI SEQ_129337, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7617
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:4091 original size:17 final size:17

Alignment explanation


    Indices: 4037--4091  Score: 74
    Period size: 17  Copynumber: 3.2  Consensus size: 17

       4027 ATCGTATTCT

                            *
       4037 CATTGTCATTACATTTT
          1 CATTGTCATTACATTTC

            *         *     *
       4054 AATTGTCATTGCATTTG
          1 CATTGTCATTACATTTC

                             
       4071 CATTGTCATTACATTTC
          1 CATTGTCATTACATTTC

                
       4088 CATT
          1 CATT

       4092 TGTCCTTATA


Statistics
Matches: 32,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  17   32  1.00

ACGTcount: A:0.24, C:0.18, G:0.09, T:0.49


Consensus pattern (17 bp):   
CATTGTCATTACATTTC
Done.