Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014304.1 Kokia drynarioides strain JFW-HI SEQ_129340, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 901

Length: 1502
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32


Found at i:1439 original size:29 final size:29

Alignment explanation


    Indices: 1407--1493  Score: 88
    Period size: 29  Copynumber: 3.0  Consensus size: 29

       1397 GTCGAATTAG

                                *         
       1407 AGATTCAGCTATAGATGCAGTCATG-TAAC
          1 AGATTCAGCTATAGATGCAGACATGAT-AC

                        **               *
       1436 AGATAT-AGCTACGGATGCAGACATGATAT
          1 AGAT-TCAGCTATAGATGCAGACATGATAC

                *   *                    
       1465 AGATACAGTTATAGATGCAGACATGATAC
          1 AGATTCAGCTATAGATGCAGACATGATAC

       1494 CCCCATCTG


Statistics
Matches: 46,  Mismatches: 9, Indels: 6
        0.75            0.15        0.10

Matches are distributed among these distances:
  29   44  0.96
  30    2  0.04

ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25


Consensus pattern (29 bp):   
AGATTCAGCTATAGATGCAGACATGATAC
Done.