Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014309.1 Kokia drynarioides strain JFW-HI SEQ_129345, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4601
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32


Found at i:2315 original size:51 final size:50

Alignment explanation


    Indices: 2237--2471  Score: 251
    Period size: 51  Copynumber: 4.6  Consensus size: 50

       2227 AACTCATTTC

                 *                          *        *   *  *   
       2237 ATTCAATACTCACGATGACA-TATAGTCATCGAACCTCTTATTCCGTATAGG
          1 ATTCATTACTCACGATGACACT-TAGTCATCGGACCT-TTAATCCATAAAGG

                                              *            * *  
       2288 AATTCA-TACTCACGATGACA-TTGAGTCATCGGGCCTTTAATCCATCATGG
          1 -ATTCATTACTCACGATGACACTT-AGTCATCGGACCTTTAATCCATAAAGG

                         *     *               *       *       
       2338 ATTCATTTACTCATGATGATACTTAGTCATCGGACTTTTAATCTATAAAGG
          1 ATTCA-TTACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAAGG

                          *                             *      
       2389 ATTCATTTACTCACAATGACACTTAGTCATCGGACCTTTAATCCGTAAAGG
          1 ATTCA-TTACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAAGG

                         *                  
       2440 ATTCATTTACTCAAGATGACACTTAGTCATCG
          1 ATTCA-TTACTCACGATGACACTTAGTCATCG

       2472 AACCCTTTCA


Statistics
Matches: 157,  Mismatches: 22, Indels: 9
        0.84            0.12        0.05

Matches are distributed among these distances:
  49    5  0.03
  50   10  0.06
  51  135  0.86
  52    7  0.04

ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33


Consensus pattern (50 bp):   
ATTCATTACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAAGG
Done.