genome.fa.s14310.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014310.1 Kokia drynarioides strain JFW-HI SEQ_129347, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  253724

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79--220	71	2.0	71	93	2	241	39	32	4	23	1.76
4569--4788	53	4.2	53	80	4	230	37	20	11	30	1.88
11275--11464	53	3.6	52	85	1	236	33	19	16	30	1.94
22387--22421	2	17.5	2	100	0	70	51	0	0	48	1.00
33911--34175	41	6.4	41	84	2	282	37	9	24	27	1.87
38028--38058	15	2.0	16	93	6	55	45	6	25	22	1.76
44783--44823	17	2.4	18	80	12	50	14	21	14	48	1.80
52990--53257	123	2.2	125	84	2	344	39	10	24	25	1.87
52993--53257	41	6.4	41	84	1	298	39	10	24	25	1.88
57327--57370	22	2.0	22	82	4	54	15	22	18	43	1.88
59067--59101	15	2.2	16	90	5	54	37	0	0	62	0.95
59036--59120	24	3.5	24	76	7	75	40	0	2	57	1.11
59080--59161	28	3.1	25	75	20	69	40	0	3	56	1.17
59709--59742	18	1.9	18	88	5	52	29	0	5	64	1.17
59825--59858	17	2.1	16	89	10	52	64	2	0	32	1.08
60382--60465	39	2.2	39	95	0	150	26	5	13	54	1.61
66754--67218	41	11.3	41	86	1	592	38	11	23	26	1.89
70878--71021	75	1.9	75	89	0	225	45	7	15	31	1.74
70997--71557	138	4.1	138	92	1	899	39	6	6	46	1.57
79907--80088	41	4.4	41	87	0	229	26	24	9	38	1.87
84805--84854	13	4.1	13	77	15	52	22	36	18	24	1.95
84805--84848	23	1.9	23	90	0	70	20	40	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88532--88566	17	2.1	17	88	0	52	31	2	0	65	1.07
93781--93814	17	1.9	18	94	5	61	29	2	26	41	1.70
103414--103526	43	2.6	43	95	1	199	42	19	7	30	1.80
105967--106187	40	5.5	39	77	8	185	25	24	19	30	1.98
105947--106191	80	3.1	81	81	4	291	25	24	18	30	1.98
105961--106187	120	1.9	120	82	3	287	25	24	19	30	1.98
112918--113094	6	28.5	6	89	4	178	75	0	6	17	1.01
112918--113086	28	5.9	28	75	17	152	75	0	7	17	1.02
112929--112988	16	3.8	16	80	12	70	76	0	3	20	0.92
115864--115922	14	4.4	14	75	10	52	71	3	1	23	1.11
120547--120593	18	2.8	16	81	12	67	65	4	6	23	1.33
120926--120983	15	3.9	14	80	12	55	3	18	0	77	0.91
120929--120983	25	2.2	24	87	9	76	3	20	0	76	0.94
121706--121756	24	2.1	24	85	7	68	3	29	9	56	1.49
122054--122082	15	1.9	15	100	0	58	0	34	0	65	0.93
144006--144109	49	2.3	43	73	20	111	38	19	24	18	1.93
144017--144583	49	11.6	49	80	3	527	35	14	28	22	1.93
144017--144547	146	3.6	147	81	5	592	35	14	28	22	1.93
144017--144539	195	2.7	195	85	2	692	34	14	28	22	1.93
159418--159460	22	2.0	22	86	9	61	37	0	13	48	1.43
167722--167834	40	3.1	35	74	13	118	26	18	19	35	1.95
170357--170629	43	6.4	43	85	7	174	39	8	22	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170360--170654	86	3.4	87	84	5	327	38	9	23	28	1.86
170432--170654	43	5.2	43	91	1	331	39	8	22	29	1.85
170405--170654	129	1.9	128	85	4	342	39	9	22	28	1.85
172085--172153	34	2.0	34	100	0	138	28	2	28	39	1.71
176717--176790	9	7.6	9	73	13	58	35	4	1	59	1.25
176704--176770	30	2.3	30	92	5	111	35	2	0	61	1.12
176708--176790	20	4.2	19	74	11	69	34	3	1	60	1.22
176704--176790	30	2.9	30	86	10	99	35	3	1	59	1.22
189711--189761	22	2.4	21	80	6	57	21	13	13	50	1.76
191302--191331	3	10.0	3	100	0	60	66	0	0	33	0.92
193784--193988	69	3.0	69	79	5	218	39	16	21	22	1.92
197266--197306	16	2.6	16	85	11	50	48	0	0	51	1.00
197251--197405	81	1.9	82	80	9	183	51	3	2	42	1.31
197949--198077	64	2.0	64	100	0	258	32	7	13	45	1.73
200302--200453	30	5.1	29	84	8	164	39	23	2	34	1.69
200302--200453	60	2.6	59	81	8	184	39	23	2	34	1.69
205177--205215	19	2.1	18	90	4	60	82	0	15	2	0.79
206141--206201	6	9.7	6	88	11	79	81	0	18	0	0.68
206146--206201	13	4.2	14	80	17	66	82	0	17	0	0.68
206141--206195	27	2.1	26	90	10	85	81	0	18	0	0.68
207068--207225	49	3.2	49	81	5	158	32	18	28	19	1.96
207133--207355	97	2.3	98	78	2	270	38	17	25	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207087--207379	49	6.0	48	71	9	182	36	17	25	20	1.94
225131--225174	3	14.7	3	100	0	88	68	0	0	31	0.90
231441--231534	48	2.0	48	91	0	152	38	12	24	24	1.90
231391--231722	124	2.7	123	89	1	466	38	18	21	22	1.93
231688--231873	85	2.2	85	86	3	250	37	13	21	27	1.91
231862--232053	75	2.5	77	82	4	230	41	16	19	22	1.90
231814--232179	199	1.8	200	86	0	536	40	16	19	22	1.91
231934--232338	124	3.3	123	83	3	508	40	18	19	22	1.92
232133--232224	48	1.9	48	84	4	123	42	14	19	23	1.88
232306--232452	37	3.7	37	71	18	123	35	14	21	27	1.93
232258--232509	85	3.0	85	88	1	380	37	15	21	25	1.93
232419--232878	123	3.7	123	85	2	600	39	16	21	23	1.92
234686--234777	30	3.1	29	84	6	105	38	19	4	38	1.72
243735--243769	18	1.9	18	88	0	52	62	5	0	31	1.18
244245--244292	3	16.0	3	100	0	96	66	0	0	33	0.92
251060--251118	29	2.1	28	80	3	64	35	8	6	49	1.60
251301--251362	31	2.1	29	84	6	79	46	12	4	35	1.64
251301--251362	29	2.1	28	82	11	72	46	12	4	35	1.64
251657--251726	16	4.6	16	74	12	67	44	0	0	55	0.99
251641--251742	29	3.4	29	87	2	150	49	0	0	50	1.00
251641--251749	30	3.7	30	75	15	102	47	0	0	52	1.00
252776--252848	29	2.5	30	90	2	112	49	1	0	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252810--252851	20	2.0	22	90	9	70	52	0	0	47	1.00

Tables:   1

The End!