genome.fa.s14311.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014311.1 Kokia drynarioides strain JFW-HI SEQ_129348, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102887

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1059--1111	19	2.8	19	85	5	72	52	33	1	11	1.48
5906--5968	31	2.0	31	100	0	126	33	9	22	34	1.86
9071--9102	16	2.0	16	100	0	64	31	0	43	25	1.55
14106--14158	26	2.0	26	100	0	106	37	11	18	32	1.87
20520--20593	20	3.5	20	69	16	67	43	4	35	17	1.68
20533--20607	21	3.4	21	67	16	62	41	6	33	18	1.77
20521--20619	45	2.2	45	100	0	198	43	6	33	17	1.73
22095--22158	27	2.3	27	86	7	85	39	21	14	25	1.91
22092--22332	28	8.7	28	76	6	188	34	16	23	26	1.95
22272--22379	27	3.9	28	75	8	96	35	14	22	27	1.93
22276--22401	55	2.3	55	82	4	157	38	15	21	24	1.93
30184--30317	71	1.9	71	92	0	223	26	4	36	32	1.76
33454--33496	16	2.8	16	79	10	54	60	0	2	37	1.10
33702--33782	41	2.0	41	80	9	94	46	4	6	41	1.50
35158--35197	18	2.3	18	95	4	73	42	10	5	42	1.60
47831--47881	25	2.0	25	92	0	84	27	25	17	29	1.98
49978--50007	11	2.7	11	100	0	60	36	16	36	10	1.82
53454--53772	30	10.8	29	76	4	226	37	26	1	34	1.65
53454--53772	59	5.4	59	78	4	286	37	26	1	34	1.65
57479--57660	91	2.0	91	97	0	346	36	15	13	33	1.87
58059--58117	31	1.9	30	86	10	84	37	0	0	62	0.95
58726--58783	28	2.1	28	84	12	75	65	1	1	31	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59406--59443	18	2.1	18	85	9	51	44	0	5	50	1.24
60363--60423	25	2.7	21	72	20	52	60	4	1	32	1.28
60465--60526	30	2.1	30	90	0	97	54	17	6	20	1.65
71516--71580	18	3.6	18	70	0	67	18	29	21	30	1.97
75734--75781	13	3.5	13	78	15	60	47	0	0	52	1.00
75726--75785	29	2.1	28	93	3	102	51	0	0	48	1.00
75736--75783	14	3.4	14	72	16	53	50	0	0	50	1.00
76869--76938	31	2.3	30	90	9	108	45	0	1	52	1.09
76869--76938	30	2.3	31	90	4	108	45	0	1	52	1.09
79881--80104	24	9.3	24	76	0	187	23	25	13	37	1.92
79890--80104	72	3.0	72	88	0	277	23	26	13	36	1.92
83475--83811	30	11.4	29	72	10	227	37	25	2	34	1.71
83474--83827	59	6.0	59	83	4	399	36	25	3	34	1.72
83474--83827	118	3.0	118	83	5	462	36	25	3	34	1.72
89369--89456	1	88.0	1	67	0	50	84	0	15	0	0.63
89369--89457	4	18.0	5	74	21	57	83	0	16	0	0.65
89369--89456	19	4.8	18	82	12	108	84	0	15	0	0.63
90662--90854	48	4.0	47	75	11	167	42	24	21	11	1.86
90970--91126	50	3.1	50	68	18	142	40	14	15	29	1.87
91418--92104	206	3.3	206	90	2	1085	35	18	22	23	1.96
92078--92131	27	2.0	27	100	0	108	29	11	33	25	1.91
93400--93533	41	3.3	41	81	6	130	22	24	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93458--93713	41	6.3	41	83	5	270	23	28	16	31	1.96
93418--93713	82	3.7	82	80	2	305	23	28	17	30	1.97
95807--95913	54	2.0	54	100	0	214	21	14	33	29	1.94
101283--101606	49	6.6	48	73	8	249	40	17	22	19	1.91
101283--101603	98	3.3	97	86	4	432	40	17	22	19	1.91
101283--101637	196	1.8	196	83	3	482	40	18	22	19	1.92
101283--101657	98	3.8	99	82	5	406	40	17	22	19	1.91

Tables:   1

The End!