Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014316.1 Kokia drynarioides strain JFW-HI SEQ_129353, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 111642
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Found at i:5568 original size:35 final size:36
Alignment explanation
Indices: 5522--5615 Score: 145
Period size: 35 Copynumber: 2.6 Consensus size: 36
5512 AGCTTTGATC
*
5522 TGCTTATGTCTCGGTTAGAGCGTAAGGTTATGGA-T
1 TGCTTACGTCTCGGTTAGAGCGTAAGGTTATGGATT
* *
5557 TGCTTACGTCTCGGTTAAAGTGTAAGGTTATGGATT
1 TGCTTACGTCTCGGTTAGAGCGTAAGGTTATGGATT
*
5593 TGCTTACGTCTTGGTTAGAGCGT
1 TGCTTACGTCTCGGTTAGAGCGT
5616 GTAATGCTTA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 31 0.60
36 21 0.40
ACGTcount: A:0.19, C:0.13, G:0.30, T:0.38
Consensus pattern (36 bp):
TGCTTACGTCTCGGTTAGAGCGTAAGGTTATGGATT
Found at i:6267 original size:35 final size:35
Alignment explanation
Indices: 6219--6417 Score: 226
Period size: 35 Copynumber: 5.7 Consensus size: 35
6209 GAGCTTTGAT
* * *
6219 TTGCTTACATCTCGGTTAGGGTGAAAGGTTATGGA
1 TTGCTTACGTCTCGGTTAGAGTGTAAGGTTATGGA
*
6254 TTGCTTACGTCTCGGTTAGAGCGTAAGGTTATGGA
1 TTGCTTACGTCTCGGTTAGAGTGTAAGGTTATGGA
* *
6289 TTGCTTATGTCTCGGTTAGAGTGTAAGGTTTTGGA
1 TTGCTTACGTCTCGGTTAGAGTGTAAGGTTATGGA
* * *
6324 TTGGTTACGTCTTGGTTAGAGCGTAA-G-TA--GA
1 TTGCTTACGTCTCGGTTAGAGTGTAAGGTTATGGA
* * *
6355 TTTGCTTACGTCTCGATTAGAGTGTAAGGTTACGAA
1 -TTGCTTACGTCTCGGTTAGAGTGTAAGGTTATGGA
* *
6391 TTTGCTTACATCTCGGTTAGAGCGTAA
1 -TTGCTTACGTCTCGGTTAGAGTGTAA
6418 TGCTATTATA
Statistics
Matches: 139, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
31 2 0.01
32 22 0.16
33 2 0.01
34 3 0.02
35 85 0.61
36 25 0.18
ACGTcount: A:0.22, C:0.13, G:0.29, T:0.37
Consensus pattern (35 bp):
TTGCTTACGTCTCGGTTAGAGTGTAAGGTTATGGA
Found at i:6332 original size:70 final size:67
Alignment explanation
Indices: 6216--6417 Score: 253
Period size: 70 Copynumber: 3.0 Consensus size: 67
6206 GTAGAGCTTT
* * *
6216 GATTTGCTTACATCTCGGTTAGGGTGAAAGGTTATGGATTGCTTACGTCTCGGTTAGAGCGTAAG
1 GATTTGCTTACGTCTCGGTTAGAGTGTAAGGTTATGGATTGCTTACGTCTCGGTTAGAGCGTAA-
6281 GTTA
65 G-TA
* * * *
6285 TGGA-TTGCTTATGTCTCGGTTAGAGTGTAAGGTTTTGGATTGGTTACGTCTTGGTTAGAGCGTA
1 --GATTTGCTTACGTCTCGGTTAGAGTGTAAGGTTATGGATTGCTTACGTCTCGGTTAGAGCGTA
6349 AGTA
64 AGTA
* * * *
6353 GATTTGCTTACGTCTCGATTAGAGTGTAAGGTTACGAATTTGCTTACATCTCGGTTAGAGCGTAA
1 GATTTGCTTACGTCTCGGTTAGAGTGTAAGGTTATGGA-TTGCTTACGTCTCGGTTAGAGCGTAA
6418 TGCTATTATA
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
66 2 0.02
67 30 0.26
68 25 0.22
69 1 0.01
70 54 0.47
71 2 0.02
ACGTcount: A:0.22, C:0.12, G:0.29, T:0.37
Consensus pattern (67 bp):
GATTTGCTTACGTCTCGGTTAGAGTGTAAGGTTATGGATTGCTTACGTCTCGGTTAGAGCGTAAG
TA
Found at i:9489 original size:35 final size:36
Alignment explanation
Indices: 9426--9525 Score: 139
Period size: 36 Copynumber: 2.8 Consensus size: 36
9416 TTGGACCCTC
* * *
9426 CTTAGGTCTCGATTAAAGCGTAAAGTTATGGA-TTG
1 CTTACGTCTCGATTAGAGCGTAAGGTTATGGATTTG
* *
9461 CTTATGTCTCGATTAGAGTGTAAGGTTATGGATTTG
1 CTTACGTCTCGATTAGAGCGTAAGGTTATGGATTTG
*
9497 CTTACGTCTCGGTTAGAGCGTAAGGTTAT
1 CTTACGTCTCGATTAGAGCGTAAGGTTAT
9526 TATGTCTCGG
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
35 28 0.49
36 29 0.51
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.37
Consensus pattern (36 bp):
CTTACGTCTCGATTAGAGCGTAAGGTTATGGATTTG
Found at i:9540 original size:27 final size:27
Alignment explanation
Indices: 9502--9555 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
9492 ATTTGCTTAC
*
9502 GTCTCGGTTAGAGCGTAAGGTTATTAT
1 GTCTCGGTTAGAGCGTAAGGCTATTAT
*
9529 GTCTCGGTTAGAGCGTAATGCTATTAT
1 GTCTCGGTTAGAGCGTAAGGCTATTAT
9556 AGCTCAAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.13, G:0.28, T:0.37
Consensus pattern (27 bp):
GTCTCGGTTAGAGCGTAAGGCTATTAT
Found at i:14401 original size:35 final size:35
Alignment explanation
Indices: 14348--14510 Score: 182
Period size: 35 Copynumber: 4.6 Consensus size: 35
14338 AGCTTTGATC
**
14348 TGCTTACGTCTCTATTAGAGCGTAAGGTTATGGAT
1 TGCTTACGTCTCGGTTAGAGCGTAAGGTTATGGAT
* *
14383 TGCTTACATCTCGGTTAGAGCGTAAGGTTATGAAT
1 TGCTTACGTCTCGGTTAGAGCGTAAGGTTATGGAT
* * ** *
14418 TGCTTACATCTTGGTTAGAGTATAAGGTTATGGGTT
1 TGCTTACGTCTCGGTTAGAGCGTAAGGTTAT-GGAT
* * *
14454 TGCTTATGTCTCAGTTAGAGCGTAAGGTTATGTATT
1 TGCTTACGTCTCGGTTAGAGCGTAAGGTTATGGA-T
* *
14490 TGCTTATGTCTCGTTTAGAGC
1 TGCTTACGTCTCGGTTAGAGC
14511 ATAATGCTAT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
35 60 0.56
36 47 0.44
ACGTcount: A:0.22, C:0.13, G:0.26, T:0.39
Consensus pattern (35 bp):
TGCTTACGTCTCGGTTAGAGCGTAAGGTTATGGAT
Found at i:15410 original size:24 final size:25
Alignment explanation
Indices: 15350--15410 Score: 88
Period size: 27 Copynumber: 2.4 Consensus size: 25
15340 AATTCTAGGT
*
15350 AGTGCCTATGAGGTAGGTGGCACCA
1 AGTGCCTATTAGGTAGGTGGCACCA
15375 ATGGTGCCTATTAGGTAGGTGGCACC-
1 A--GTGCCTATTAGGTAGGTGGCACCA
15401 AGTGCCTATT
1 AGTGCCTATT
15411 TAAGCACTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
24 9 0.27
25 1 0.03
26 1 0.03
27 22 0.67
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (25 bp):
AGTGCCTATTAGGTAGGTGGCACCA
Found at i:15461 original size:20 final size:21
Alignment explanation
Indices: 15438--15486 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
15428 AAGCTTAAAC
*
15438 ACAAATTTTTGAAGAA-GAAG
1 ACAAATTTTTGAACAAGGAAG
15458 ACAAATTTTTGAACAAGGAAG
1 ACAAATTTTTGAACAAGGAAG
15479 -CAAATTTT
1 ACAAATTTT
15487 GTTCAAACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 23 0.85
21 4 0.15
ACGTcount: A:0.47, C:0.08, G:0.16, T:0.29
Consensus pattern (21 bp):
ACAAATTTTTGAACAAGGAAG
Found at i:18304 original size:26 final size:26
Alignment explanation
Indices: 18272--18366 Score: 127
Period size: 26 Copynumber: 3.7 Consensus size: 26
18262 GGAATTATTC
**
18272 ATGTTTAAATTTGTATTTAATTAATA
1 ATGTTTATGTTTGTATTTAATTAATA
* * *
18298 ATTTTTATGTTTGTATTTAGTTAATT
1 ATGTTTATGTTTGTATTTAATTAATA
*
18324 ATGTTTATGTTTGTATTTAATTAATT
1 ATGTTTATGTTTGTATTTAATTAATA
*
18350 ATGTTGATGTTTGTATT
1 ATGTTTATGTTTGTATT
18367 CAGGGGTCTA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 61 1.00
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (26 bp):
ATGTTTATGTTTGTATTTAATTAATA
Found at i:18520 original size:14 final size:14
Alignment explanation
Indices: 18481--18514 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
18471 TAGGACTTAT
*
18481 GATTTAAGGTTTAG
1 GATTTAATGTTTAG
*
18495 GGTTTAATGTTTAG
1 GATTTAATGTTTAG
18509 GATTTA
1 GATTTA
18515 GAGTTTGTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (14 bp):
GATTTAATGTTTAG
Found at i:19418 original size:16 final size:15
Alignment explanation
Indices: 19399--19428 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
19389 ATTAGGTTTT
19399 TAAGGTTTTAAGGGTG
1 TAAGGTTTT-AGGGTG
19415 TAAGGTTTTAGGGT
1 TAAGGTTTTAGGGT
19429 TTATTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.00, G:0.37, T:0.40
Consensus pattern (15 bp):
TAAGGTTTTAGGGTG
Found at i:19439 original size:31 final size:31
Alignment explanation
Indices: 19404--19491 Score: 86
Period size: 31 Copynumber: 2.8 Consensus size: 31
19394 GTTTTTAAGG
* * * *
19404 TTTTAAGGGTGTAAGGTTTTAGGGTTTATTA
1 TTTTAAGGATATAAGATTATAGGGTTTATTA
* *
19435 TTTTAAGGATATACGATTATAGGTTTTATTA
1 TTTTAAGGATATAAGATTATAGGGTTTATTA
* * * *
19466 TTTTAGGGATACACGGTTATAGGGTT
1 TTTTAAGGATATAAGATTATAGGGTT
19492 ATAAGGTTTT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.26, C:0.03, G:0.25, T:0.45
Consensus pattern (31 bp):
TTTTAAGGATATAAGATTATAGGGTTTATTA
Found at i:19526 original size:12 final size:12
Alignment explanation
Indices: 19509--19536 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
19499 TTTAAATCAA
19509 TTAATTAAGTAC
1 TTAATTAAGTAC
19521 TTAATTAAGTAC
1 TTAATTAAGTAC
19533 TTAA
1 TTAA
19537 GTCAGAGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (12 bp):
TTAATTAAGTAC
Found at i:19576 original size:21 final size:22
Alignment explanation
Indices: 19552--19596 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
19542 AGCAAACCCT
19552 AAATACTAAACCCTAAA-CTTA
1 AAATACTAAACCCTAAACCTTA
* *
19573 AAATATTAAACCTTAAACCTTA
1 AAATACTAAACCCTAAACCTTA
19595 AA
1 AA
19597 TCCAAAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (22 bp):
AAATACTAAACCCTAAACCTTA
Found at i:19597 original size:21 final size:21
Alignment explanation
Indices: 19545--19597 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
19535 AAGTCAGAGC
*
19545 AAACCCTAAATACTAAACCCT
1 AAACCTTAAATACTAAACCCT
* *
19566 AAA-CTTAAAATATTAAACCTT
1 AAACCTT-AAATACTAAACCCT
19587 AAACCTTAAAT
1 AAACCTTAAAT
19598 CCAAAATCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 2 0.07
21 22 0.81
22 3 0.11
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (21 bp):
AAACCTTAAATACTAAACCCT
Found at i:19627 original size:14 final size:14
Alignment explanation
Indices: 19578--19629 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
19568 ACTTAAAATA
*
19578 TTAAACCTTAAACC
1 TTAAACCCTAAACC
* * *
19592 TTAAATCCAAAATC
1 TTAAACCCTAAACC
*
19606 ATAAACCCTAAACC
1 TTAAACCCTAAACC
19620 TTAAACCCTA
1 TTAAACCCTA
19630 GATACAAACA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.25
Consensus pattern (14 bp):
TTAAACCCTAAACC
Found at i:23360 original size:19 final size:20
Alignment explanation
Indices: 23323--23360 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
23313 TTTATGGTTT
*
23323 TAAATAATTTTTGGGTAAAA
1 TAAATAATTTTTGAGTAAAA
*
23343 TAAAT-ATTTTTGATTAAA
1 TAAATAATTTTTGAGTAAA
23361 TTGGAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (20 bp):
TAAATAATTTTTGAGTAAAA
Found at i:25223 original size:22 final size:22
Alignment explanation
Indices: 25148--25228 Score: 67
Period size: 22 Copynumber: 3.7 Consensus size: 22
25138 GGATGTATTA
*
25148 TGTCAATATAATTGATTAATTG
1 TGTCAATATAATTGATTGATTG
*
25170 CG-CTAATATAATTGATTGATT-
1 TGTC-AATATAATTGATTGATTG
*** *
25191 TCAAAATTTTAATTGATTGATTG
1 TGTCAA-TATAATTGATTGATTG
*
25214 TGTCAATTTAATTGA
1 TGTCAATATAATTGA
25229 ATATTTTTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
21 3 0.07
22 40 0.87
23 3 0.07
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.46
Consensus pattern (22 bp):
TGTCAATATAATTGATTGATTG
Found at i:30380 original size:26 final size:24
Alignment explanation
Indices: 30351--30413 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 24
30341 TTAATTAGTA
*
30351 TAAAATATTAAGAATTTAAAATAAAT
1 TAAAA-ATTAAGAATTT-AAACAAAT
*
30377 TAAAAAGTTAACAATTTAAACAAAT
1 TAAAAA-TTAAGAATTTAAACAAAT
30402 TAAAAATTAAGA
1 TAAAAATTAAGA
30414 GAGATTTTCC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 5 0.15
25 14 0.42
26 14 0.42
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (24 bp):
TAAAAATTAAGAATTTAAACAAAT
Found at i:31162 original size:28 final size:29
Alignment explanation
Indices: 31112--31167 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
31102 CTACTTAAAA
* * *
31112 TATTTACAGAAAAAGATAGCAAATTTCAG
1 TATTTACAGAAAAAAAAACCAAATTTCAG
31141 TATTTACA-AAAAAAAAACCAAATTTCA
1 TATTTACAGAAAAAAAAACCAAATTTCA
31168 CAAATAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.54, C:0.12, G:0.07, T:0.27
Consensus pattern (29 bp):
TATTTACAGAAAAAAAAACCAAATTTCAG
Found at i:33754 original size:51 final size:51
Alignment explanation
Indices: 33693--33830 Score: 158
Period size: 50 Copynumber: 2.7 Consensus size: 51
33683 TGCATGACTT
*
33693 GATTTAATGATGCAAACTTTAACTAACATGGGAGTTACATAATGCATGAT-AG
1 GATTT-ATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCATG-TCAG
* * *
33745 GATTTATGATGCATA-TTTAACTAACATGTA-AGTTACTTAATGCATGTCAT
1 GATTTATGATGCAAACTTTAACTAACATG-AGAGTTACATAATGCATGTCAG
* *
33795 TATTGATGATGCAAAC-TTAACTAATCATGAGAGTTA
1 GATTTATGATGCAAACTTTAACTAA-CATGAGAGTTA
33831 ATGGATGTCA
Statistics
Matches: 74, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
49 1 0.01
50 50 0.68
51 18 0.24
52 5 0.07
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.35
Consensus pattern (51 bp):
GATTTATGATGCAAACTTTAACTAACATGAGAGTTACATAATGCATGTCAG
Found at i:34056 original size:17 final size:17
Alignment explanation
Indices: 34025--34057 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
34015 CAAACACTTA
34025 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
34042 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
34058 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:36528 original size:9 final size:9
Alignment explanation
Indices: 36497--36527 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
36487 GTACTCGAAA
36497 TTTTTCTTC
1 TTTTTCTTC
36506 TTTTTCTTC
1 TTTTTCTTC
36515 TTTTT-TTC
1 TTTTTCTTC
36523 TTTTT
1 TTTTT
36528 TAATTCGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTCTTC
Found at i:36565 original size:30 final size:28
Alignment explanation
Indices: 36531--36612 Score: 87
Period size: 30 Copynumber: 2.9 Consensus size: 28
36521 TCTTTTTTAA
36531 TTCGAATTTTTTTCTTCTTTTTTAACAA-AC
1 TTCGAATTTTTTTCTT-TTTTTT--CAATAC
** *
36561 TTCGAATTTTCTTTGATTTTTTTCAATAT
1 TTCGAATTTT-TTTCTTTTTTTTCAATAC
36590 TTCG-ATTTTTTTCTTTTTTTTCA
1 TTCGAATTTTTTTCTTTTTTTTCA
36613 CTTTTTCTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
27 12 0.27
28 8 0.18
29 5 0.11
30 16 0.36
31 4 0.09
ACGTcount: A:0.18, C:0.13, G:0.05, T:0.63
Consensus pattern (28 bp):
TTCGAATTTTTTTCTTTTTTTTCAATAC
Found at i:37241 original size:302 final size:302
Alignment explanation
Indices: 36725--37294 Score: 951
Period size: 302 Copynumber: 1.9 Consensus size: 302
36715 TGAAAGATAA
*
36725 CTTGTTGGAAGAATCGTCTTGAAATGATTCACAAAGTGAAAACCTTAATTCGAAGCACTTGAATT
1 CTTGTTGGAAGAATCATCTTGAAATGATTCACAAAGTGAAAACCTTAATTCGAAGCACTTGAATT
* * * *
36790 CTCTAAGGAACCGTAGCTATTTTAAAACTACGACCTGCTTAAACTTGACCATATACTCGAATCTT
66 CTCTAAGAAACCGTAGCTATATTAAAACTACGACCCGCTTAAACTTGACCATATACTCGAATCTC
* * * * * *
36855 GGTGTATCGAAGTTGTCACACCCCGGGATGGTAAATAGAGTGATAAGACAAATTTTGAATGCCAC
131 GGTGTATCGAAGTCGCCACACCCCAGGATGATAAACAGAGTGATAAGACAAATTTTGAACGCCAC
* *
36920 AAACTTTGAAGAAAGTTTGATAAGTTCAAACAGTTCAACGAAGAACCAAGAGAGAAATGTTCTCA
196 AAACTTCGAAGAAAGTTTGATAAGTTCAAACAGTTCAACGAAGAACCAAGAGAGAAATATTCTCA
36985 CAAATGATGTGAGCTTCAGATCTTTGAGTGTTCAGAAGACAG
261 CAAATGATGTGAGCTTCAGATCTTTGAGTGTTCAGAAGACAG
* *
37027 CTTGTTGGAAGAATCATTTTGAAATGGTTCACAAAGTGAAAACCTTAATTCGAAGCACTTGAATT
1 CTTGTTGGAAGAATCATCTTGAAATGATTCACAAAGTGAAAACCTTAATTCGAAGCACTTGAATT
*
37092 CTCTAAGAAACTGTAGCTATATTAAAACTACGACCCGCTTAAACTTGACCATATACTCGAATCTC
66 CTCTAAGAAACCGTAGCTATATTAAAACTACGACCCGCTTAAACTTGACCATATACTCGAATCTC
*
37157 GGTGTATCGAAGTCGCCACACCCCAGGATGATTAACAGAGTGATAAGACAAATTTTGAACGCCAC
131 GGTGTATCGAAGTCGCCACACCCCAGGATGATAAACAGAGTGATAAGACAAATTTTGAACGCCAC
* * *
37222 AAACTTCGAAGACAGTTTGATAAGTTCGAACAGTTCAACTAAGAACCAAGAGAGAAATATTCTCA
196 AAACTTCGAAGAAAGTTTGATAAGTTCAAACAGTTCAACGAAGAACCAAGAGAGAAATATTCTCA
*
37287 CAATTGAT
261 CAAATGAT
37295 TTAAATTCAA
Statistics
Matches: 247, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
302 247 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (302 bp):
CTTGTTGGAAGAATCATCTTGAAATGATTCACAAAGTGAAAACCTTAATTCGAAGCACTTGAATT
CTCTAAGAAACCGTAGCTATATTAAAACTACGACCCGCTTAAACTTGACCATATACTCGAATCTC
GGTGTATCGAAGTCGCCACACCCCAGGATGATAAACAGAGTGATAAGACAAATTTTGAACGCCAC
AAACTTCGAAGAAAGTTTGATAAGTTCAAACAGTTCAACGAAGAACCAAGAGAGAAATATTCTCA
CAAATGATGTGAGCTTCAGATCTTTGAGTGTTCAGAAGACAG
Found at i:38216 original size:50 final size:50
Alignment explanation
Indices: 38130--38260 Score: 156
Period size: 50 Copynumber: 2.6 Consensus size: 50
38120 TGCATGACTT
*
38130 GATTTAATGATGCAAACTTTAACTAACATGGGAGTTACATAATGCATGAT-AG
1 GATTT-ATGATGCAAA-TTTAACTAACATGGAAGTTACATAATGCATG-TCAG
* * * *
38182 GATTTATGATGCATATTTAACTAACATGTAAGTTACTTAATGCATGTCAT
1 GATTTATGATGCAAATTTAACTAACATGGAAGTTACATAATGCATGTCAG
* *
38232 TATTTATGATGCAAACTTAACTAATCATG
1 GATTTATGATGCAAATTTAACTAA-CATG
38261 AGAGTTAATG
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
49 1 0.01
50 50 0.72
51 13 0.19
52 5 0.07
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (50 bp):
GATTTATGATGCAAATTTAACTAACATGGAAGTTACATAATGCATGTCAG
Found at i:38493 original size:17 final size:17
Alignment explanation
Indices: 38462--38494 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
38452 CAAACACTTA
38462 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
38479 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
38495 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:43400 original size:43 final size:43
Alignment explanation
Indices: 43352--43520 Score: 171
Period size: 43 Copynumber: 3.9 Consensus size: 43
43342 ACATTTGAGA
43352 GGAACATTGTTTCCTAAAATTAAAAGTATGAGATTGATTGTGT
1 GGAACATTGTTTCCTAAAATTAAAAGTATGAGATTGATTGTGT
* * *
43395 GGAACACTGTTTCCTAAAATTGAAAGTATGAGATTGATTATGT
1 GGAACATTGTTTCCTAAAATTAAAAGTATGAGATTGATTGTGT
* ** * * *** *
43438 GGAACAATGTTTCCTATTATTGAAAGTATGTGAACAAATGAT-T
1 GGAACATTGTTTCCTAAAATTAAAAGTATGAGATTGATTG-TGT
* * *
43481 GGAACATTGTTTCCTAATATTGATAA-TATGTGATTGATTG
1 GGAACATTGTTTCCTAAAATT-AAAAGTATGAGATTGATTG
43521 AGAGCATGAT
Statistics
Matches: 104, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
43 101 0.97
44 3 0.03
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.37
Consensus pattern (43 bp):
GGAACATTGTTTCCTAAAATTAAAAGTATGAGATTGATTGTGT
Found at i:43745 original size:28 final size:28
Alignment explanation
Indices: 43705--43801 Score: 124
Period size: 28 Copynumber: 3.4 Consensus size: 28
43695 TATCGAGGGG
43705 ATTGGCGATCTTTATCGCATTATTTGTT
1 ATTGGCGATCTTTATCGCATTATTTGTT
* * *
43733 ATTGGCGATCTTTAACTCATTA-TTGAT
1 ATTGGCGATCTTTATCGCATTATTTGTT
* *
43760 ATTGGTGATCTTTATCGCATTATTCGTT
1 ATTGGCGATCTTTATCGCATTATTTGTT
43788 ATTTGGCAGATCTT
1 A-TTGGC-GATCTT
43802 CTGCATTATT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
27 23 0.40
28 24 0.42
29 4 0.07
30 6 0.11
ACGTcount: A:0.21, C:0.14, G:0.18, T:0.47
Consensus pattern (28 bp):
ATTGGCGATCTTTATCGCATTATTTGTT
Found at i:43770 original size:27 final size:27
Alignment explanation
Indices: 43705--43801 Score: 113
Period size: 27 Copynumber: 3.4 Consensus size: 27
43695 TATCGAGGGG
*
43705 ATTGGCGATCTTTATCGCATTATTTGTT
1 ATTGGCGATCTTTATCGCATTA-TTGAT
* *
43733 ATTGGCGATCTTTAACTCATTATTGAT
1 ATTGGCGATCTTTATCGCATTATTGAT
* *
43760 ATTGGTGATCTTTATCGCATTATTCGTT
1 ATTGGCGATCTTTATCGCATTATT-GAT
43788 ATTTGGCAGATCTT
1 A-TTGGC-GATCTT
43802 CTGCATTATT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 25 0.43
28 23 0.40
29 4 0.07
30 6 0.10
ACGTcount: A:0.21, C:0.14, G:0.18, T:0.47
Consensus pattern (27 bp):
ATTGGCGATCTTTATCGCATTATTGAT
Found at i:44261 original size:17 final size:17
Alignment explanation
Indices: 44239--44271 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
44229 TTTGGAATTG
44239 TTTTGCTTTGGGATTTA
1 TTTTGCTTTGGGATTTA
44256 TTTTGCTTTGGGATTT
1 TTTTGCTTTGGGATTT
44272 TTCATGCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.09, C:0.06, G:0.24, T:0.61
Consensus pattern (17 bp):
TTTTGCTTTGGGATTTA
Found at i:50677 original size:17 final size:17
Alignment explanation
Indices: 50623--50685 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
50613 GACATTAATT
*
50623 TGCAATGACACATGGAAA
1 TGCAATGACA-ATGAAAA
* *
50641 TGCAATGACAATGCACA
1 TGCAATGACAATGAAAA
* *
50658 TGCAGTGACAATTAAAA
1 TGCAATGACAATGAAAA
*
50675 TGCAAAGACAA
1 TGCAATGACAA
50686 AGGGAATGTG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
17 27 0.73
18 10 0.27
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.17
Consensus pattern (17 bp):
TGCAATGACAATGAAAA
Found at i:60056 original size:26 final size:26
Alignment explanation
Indices: 60023--60120 Score: 151
Period size: 26 Copynumber: 3.8 Consensus size: 26
60013 TTTGAACATT
* * * *
60023 GGCTCGTAAGAGCGATACTCTGTCTG
1 GGCTCGTAAGAGCTAAACTTTATCTG
60049 GGCTCGTAAGAGCTAAACTTTATCTG
1 GGCTCGTAAGAGCTAAACTTTATCTG
60075 GGCTCGTAAGAGCTAAACTTTATCTG
1 GGCTCGTAAGAGCTAAACTTTATCTG
*
60101 GGCTCGTACGAGCTAAACTT
1 GGCTCGTAAGAGCTAAACTT
60121 CTGGAAGACT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 67 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (26 bp):
GGCTCGTAAGAGCTAAACTTTATCTG
Found at i:67060 original size:27 final size:27
Alignment explanation
Indices: 67022--67077 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
67012 CTAATCCATG
67022 TTCACTTGCTTAATCGCCCACATTACC
1 TTCACTTGCTTAATCGCCCACATTACC
67049 TTCACTTGCTTAATCGCCCACATTACC
1 TTCACTTGCTTAATCGCCCACATTACC
67076 TT
1 TT
67078 GTGCTCCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.36, G:0.07, T:0.36
Consensus pattern (27 bp):
TTCACTTGCTTAATCGCCCACATTACC
Found at i:76163 original size:25 final size:25
Alignment explanation
Indices: 76130--76185 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
76120 TCTGAACACT
76130 GGCTCGTAAGAGCGATATTATGTTA
1 GGCTCGTAAGAGCGATATTATGTTA
* * *
76155 GGCTTGTAAGAGCGATATTTTGTTT
1 GGCTCGTAAGAGCGATATTATGTTA
76180 GGCTCG
1 GGCTCG
76186 AAAGGGTGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.21, C:0.12, G:0.30, T:0.36
Consensus pattern (25 bp):
GGCTCGTAAGAGCGATATTATGTTA
Found at i:81288 original size:137 final size:137
Alignment explanation
Indices: 81112--81633 Score: 792
Period size: 137 Copynumber: 3.9 Consensus size: 137
81102 GGTAACATTA
* * * *
81112 ATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTATAGAAATTATTAATATAAAC
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTGACAGAATTTATTAATATAAAC
*
81177 AATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAA
66 AATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAA
81242 TATAATT
131 TATAATT
*
81249 GATATATGAATTTGATTCATA-AAAATATTAATTGTATATATTTGACCGAATTTATTAATATAAA
1 -ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTGACAGAATTTATTAATATAAA
* *
81313 CAATTATATTAATTAATTTGGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAATA
65 CAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGA
81378 ATATAATT
130 ATATAATT
*
81386 AATATATGAATTTGATTCATA-AAAATATTAATTGTATATATTTGACA-TATTTATTAATATAAA
1 -ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTGACAGAATTTATTAATATAAA
* *
81449 CAATTATATTAATTAATTTGGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGAAAAG-
65 CAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGA
81513 A-AT-A-T
130 ATATAATT
* * * *
81518 A-ATATGAATTTGATTCATACAAAAT-TTAATTGTATATATTTTACATAATTTATTAGTATAAGC
1 ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTGACAGAATTTATTAATATAAAC
* ** *
81581 AGTTATATTAATTAATTTCAATCAAAATATAAAAGTCATGAAAATTAATATTC
66 AATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTC
81634 ACTTTGAGAG
Statistics
Matches: 360, Mismatches: 22, Indels: 11
0.92 0.06 0.03
Matches are distributed among these distances:
130 37 0.10
131 68 0.19
132 1 0.00
133 1 0.00
134 2 0.01
135 1 0.00
136 77 0.21
137 154 0.43
138 19 0.05
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.40
Consensus pattern (137 bp):
ATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTGACAGAATTTATTAATATAAAC
AATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAA
TATAATT
Found at i:83110 original size:13 final size:12
Alignment explanation
Indices: 83074--83108 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
83064 TCTTTTTATT
*
83074 TTTTTAGTTAAA
1 TTTTTAGTTTAA
83086 TTATTTAGTTTAA
1 TT-TTTAGTTTAA
83099 TTTTTAGTTT
1 TTTTTAGTTT
83109 TATCAAACCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (12 bp):
TTTTTAGTTTAA
Found at i:89087 original size:17 final size:16
Alignment explanation
Indices: 89065--89098 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
89055 TTTAAATAGC
89065 ATAAAACAAAAGATAAA
1 ATAAAACAAAAG-TAAA
*
89082 ATAAAATAAAAGTAAA
1 ATAAAACAAAAGTAAA
89098 A
1 A
89099 GTTCAGTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (16 bp):
ATAAAACAAAAGTAAA
Found at i:89106 original size:5 final size:5
Alignment explanation
Indices: 89098--89142 Score: 81
Period size: 5 Copynumber: 9.0 Consensus size: 5
89088 TAAAAGTAAA
*
89098 AGTTC AGTTG AGTTG AGTTG AGTTG AGTTG AGTTG AGTTG AGTTG
1 AGTTG AGTTG AGTTG AGTTG AGTTG AGTTG AGTTG AGTTG AGTTG
89143 TAGAAAATCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.20, C:0.02, G:0.38, T:0.40
Consensus pattern (5 bp):
AGTTG
Found at i:93585 original size:16 final size:16
Alignment explanation
Indices: 93564--93598 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
93554 TAAACTCGAC
93564 TAAAATAAACAAAAAA
1 TAAAATAAACAAAAAA
* *
93580 TAAAATAAATAATAAA
1 TAAAATAAACAAAAAA
93596 TAA
1 TAA
93599 CTAAAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (16 bp):
TAAAATAAACAAAAAA
Found at i:95417 original size:17 final size:16
Alignment explanation
Indices: 95395--95429 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
95385 TTTTAAATAG
95395 AATAAAATAAAAGATAA
1 AATAAAATAAAAG-TAA
95412 AATAAAATAAAAGTAA
1 AATAAAATAAAAGTAA
95428 AA
1 AA
95430 GTTGAGTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (16 bp):
AATAAAATAAAAGTAA
Found at i:98124 original size:27 final size:27
Alignment explanation
Indices: 98086--98181 Score: 156
Period size: 27 Copynumber: 3.5 Consensus size: 27
98076 TGAGGAGTAA
*
98086 TCTGATTCTGGCTTAAAAGAGCGTTAT
1 TCTGATTCTGGCTCAAAAGAGCGTTAT
98113 TCTGATTCTGGCTCAAAAGAGCGTTAT
1 TCTGATTCTGGCTCAAAAGAGCGTTAT
* *
98140 TCTGATTCTGGCTCAAAAGATCGATAT
1 TCTGATTCTGGCTCAAAAGAGCGTTAT
98167 TCTGATTCTAGGCTC
1 TCTGATTCT-GGCTC
98182 GTAAGAGCTA
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
27 60 0.92
28 5 0.08
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (27 bp):
TCTGATTCTGGCTCAAAAGAGCGTTAT
Found at i:98209 original size:24 final size:24
Alignment explanation
Indices: 98171--98336 Score: 226
Period size: 24 Copynumber: 6.9 Consensus size: 24
98161 CGATATTCTG
* *
98171 ATTCTAGGCTCGTAAGAGCTAACC
1 ATTCTGGGCTCGTAGGAGCTAACC
* * *
98195 GTTTTGGGCTCGTAAGAGCTAACC
1 ATTCTGGGCTCGTAGGAGCTAACC
*
98219 ATTCTGGGCTCGTAGGAGCTAACA
1 ATTCTGGGCTCGTAGGAGCTAACC
*
98243 ATTCTGGGCTCATAGGAGCTAACC
1 ATTCTGGGCTCGTAGGAGCTAACC
* *
98267 GTTCTAGGCTCGTAGGAGCTAACC
1 ATTCTGGGCTCGTAGGAGCTAACC
*
98291 ATTCTAGGCTCGTAGGAGCTAACC
1 ATTCTGGGCTCGTAGGAGCTAACC
98315 ATTCTGGGCTCGTATGG-GCTAA
1 ATTCTGGGCTCGTA-GGAGCTAA
98337 ATATTGTCTG
Statistics
Matches: 127, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
24 125 0.98
25 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (24 bp):
ATTCTGGGCTCGTAGGAGCTAACC
Found at i:101947 original size:27 final size:27
Alignment explanation
Indices: 101916--102061 Score: 256
Period size: 27 Copynumber: 5.4 Consensus size: 27
101906 TGAAGAGTAA
101916 TCTGATTCTGGCTCAAAAGAGCGTTAT
1 TCTGATTCTGGCTCAAAAGAGCGTTAT
101943 TCTGATTCTGGCTCAAAAGAGCGTTAT
1 TCTGATTCTGGCTCAAAAGAGCGTTAT
*
101970 TCTGATTCTGGCTCAAAAGATCGTTAT
1 TCTGATTCTGGCTCAAAAGAGCGTTAT
* * *
101997 TCTGATTCTAGCTAAAAAGATCGTTAT
1 TCTGATTCTGGCTCAAAAGAGCGTTAT
102024 TCTGATTCTGGCTCAAAAGAGCGTTAT
1 TCTGATTCTGGCTCAAAAGAGCGTTAT
102051 TCTGATTCTGG
1 TCTGATTCTGG
102062 GCTCGTAGAA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 113 1.00
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.36
Consensus pattern (27 bp):
TCTGATTCTGGCTCAAAAGAGCGTTAT
Found at i:102091 original size:24 final size:24
Alignment explanation
Indices: 102055--102140 Score: 120
Period size: 24 Copynumber: 3.6 Consensus size: 24
102045 CGTTATTCTG
102055 ATTCTGGGCTCGTAGAAGCTAACC
1 ATTCTGGGCTCGTAGAAGCTAACC
* *
102079 ATTTTGGGCTCGTA-AGAGCTAATC
1 ATTCTGGGCTCGTAGA-AGCTAACC
* *
102103 GTTCTGGGCTCGTAGGAGCTAACC
1 ATTCTGGGCTCGTAGAAGCTAACC
102127 ATTCTGGGCTCGTA
1 ATTCTGGGCTCGTA
102141 TGGGCTAAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
23 1 0.02
24 52 0.98
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (24 bp):
ATTCTGGGCTCGTAGAAGCTAACC
Done.