Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014319.1 Kokia drynarioides strain JFW-HI SEQ_129356, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3205
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34


Found at i:92 original size:23 final size:23

Alignment explanation


    Indices: 62--113  Score: 95
    Period size: 23  Copynumber: 2.3  Consensus size: 23

         52 TAAGAAATTG

                                   
         62 TTTATTGTTCAATTGGCATGGAC
          1 TTTATTGTTCAATTGGCATGGAC

                                   
         85 TTTATTGTTCAATTGGCATGGAC
          1 TTTATTGTTCAATTGGCATGGAC

            *     
        108 ATTATT
          1 TTTATT

        114 ACCAATGCAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  23   28  1.00

ACGTcount: A:0.23, C:0.12, G:0.19, T:0.46


Consensus pattern (23 bp):   
TTTATTGTTCAATTGGCATGGAC
Done.