Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014323.1 Kokia drynarioides strain JFW-HI SEQ_129360, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4134
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1782 original size:15 final size:15

Alignment explanation


    Indices: 1762--1791  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1752 CTAGAATTTC

                     *     
       1762 CTTATTCTTTTTATT
          1 CTTATTCTTATTATT

                           
       1777 CTTATTCTTATTATT
          1 CTTATTCTTATTATT

       1792 AAAATATAAC


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70


Consensus pattern (15 bp):   
CTTATTCTTATTATT
Done.