Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014328.1 Kokia drynarioides strain JFW-HI SEQ_129365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57581
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Warning! 85 characters in sequence are not A, C, G, or T
Found at i:1411 original size:6 final size:6
Alignment explanation
Indices: 1400--1431 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
1390 GAAAAGCTTC
1400 GGGGAA GGGGAA GGGGAA GGGGAA GGGGAA GG
1 GGGGAA GGGGAA GGGGAA GGGGAA GGGGAA GG
1432 ATGGGACAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.69, T:0.00
Consensus pattern (6 bp):
GGGGAA
Found at i:2752 original size:23 final size:25
Alignment explanation
Indices: 2705--2754 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
2695 TTATAAAAAT
2705 TAATTATATTAATTATATATGTTAAA
1 TAATTATATTAATTATATA-GTTAAA
*
2731 TAATTATATTTATT-TATA-TTAAA
1 TAATTATATTAATTATATAGTTAAA
2754 T
1 T
2755 CACTAACCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 6 0.26
25 4 0.17
26 13 0.57
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (25 bp):
TAATTATATTAATTATATAGTTAAA
Found at i:7144 original size:18 final size:18
Alignment explanation
Indices: 7121--7163 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
7111 TAGACATAAA
*
7121 TTAAAAAT-TAAATTTATT
1 TTAAAAATATAAA-TTAAT
7139 TTAAAAATATAAATTAAT
1 TTAAAAATATAAATTAAT
7157 TTAAAAA
1 TTAAAAA
7164 GGTATAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TTAAAAATATAAATTAAT
Found at i:9944 original size:23 final size:23
Alignment explanation
Indices: 9918--10065 Score: 163
Period size: 23 Copynumber: 6.3 Consensus size: 23
9908 ACACTAGCGC
9918 GCTCTCTGATTAGCACTGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* *
9941 GCTCTCTGTTTAGCAC-GTCTCGT
1 GCTCTCTGATTAGCACTGTGT-GT
9964 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG--ATTAGCACTGTGTGT
* *
9989 GCTCTCTGATTAACACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* * *
10012 GCTCTCTGACTAGTACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* * * *
10035 ACTTTCTGTTTAGCACTATGTGT
1 GCTCTCTGATTAGCACTGTGTGT
10058 GCTCTCTG
1 GCTCTCTG
10066 TTGCCCAGCA
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
22 3 0.03
23 81 0.78
25 17 0.16
26 3 0.03
ACGTcount: A:0.13, C:0.23, G:0.22, T:0.43
Consensus pattern (23 bp):
GCTCTCTGATTAGCACTGTGTGT
Found at i:9970 original size:25 final size:25
Alignment explanation
Indices: 9919--9995 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
9909 CACTAGCGCG
* *
9919 CTCTCTGATTAGCACTGTGTGTGCT
1 CTCTCTTATTAGCACTGTCTGTGCT
*
9944 CTCT-GT-TTAGCAC-GTCTCGTGCT
1 CTCTCTTATTAGCACTGTCT-GTGCT
* *
9967 CTCTGTTATTAGCACTGTGTGTGCT
1 CTCTCTTATTAGCACTGTCTGTGCT
9992 CTCT
1 CTCT
9996 GATTAACACT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
22 3 0.07
23 16 0.37
24 1 0.02
25 20 0.47
26 3 0.07
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.42
Consensus pattern (25 bp):
CTCTCTTATTAGCACTGTCTGTGCT
Found at i:10066 original size:23 final size:23
Alignment explanation
Indices: 9918--10093 Score: 158
Period size: 23 Copynumber: 7.5 Consensus size: 23
9908 ACACTAGCGC
*
9918 GCTCTCTGATTAGCACTGTGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
*
9941 GCTCTCTGTTTAGCAC-GTCTCGT
1 GCTCTCTGTTTAGCACTGTGT-GT
9964 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG-T-TTAGCACTGTGTGT
* * *
9989 GCTCTCTGATTAACACTTTGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
** * *
10012 GCTCTCTGACTAGTACTTTGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
* * *
10035 ACTTTCTGTTTAGCACTATGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
* *
10058 GCTCTCTGTTGCCCAGCACT-TATGT
1 GCTCTCTGTT---TAGCACTGTGTGT
10083 GCTCTCTGTTT
1 GCTCTCTGTTT
10094 GTTCCGTATA
Statistics
Matches: 126, Mismatches: 20, Indels: 15
0.78 0.12 0.09
Matches are distributed among these distances:
22 3 0.02
23 82 0.65
24 1 0.01
25 31 0.25
26 9 0.07
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.43
Consensus pattern (23 bp):
GCTCTCTGTTTAGCACTGTGTGT
Found at i:14509 original size:26 final size:23
Alignment explanation
Indices: 14491--14542 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 23
14481 AAAATATTTA
14491 AAAATTA-AAAAAGAAAAAAGACTAT
1 AAAATTACAAAAA-AAAAAA-A-TAT
14516 AAAATTACAAAAAAAAAAAATAAT
1 AAAATTACAAAAAAAAAAAAT-AT
14540 AAA
1 AAA
14543 TACTAAAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 1 0.04
24 6 0.24
25 13 0.52
26 5 0.20
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.15
Consensus pattern (23 bp):
AAAATTACAAAAAAAAAAAATAT
Found at i:15965 original size:2 final size:2
Alignment explanation
Indices: 15958--15985 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15948 AAATTAATTG
15958 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15986 AAAAGATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22746 original size:9 final size:9
Alignment explanation
Indices: 22732--22791 Score: 50
Period size: 10 Copynumber: 6.4 Consensus size: 9
22722 TCTTTAAGCT
22732 AATTTTTTA
1 AATTTTTTA
22741 AATTTTTTGA
1 AATTTTTT-A
**
22751 TTTTTTTTA
1 AATTTTTTA
22760 TAATTTTTTA
1 -AATTTTTTA
*
22770 AACTTTTTTT
1 AA-TTTTTTA
*
22780 AA-GTTTTA
1 AATTTTTTA
22788 AATT
1 AATT
22792 ACTTGTTGAC
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
8 6 0.15
9 11 0.28
10 22 0.56
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (9 bp):
AATTTTTTA
Found at i:22776 original size:21 final size:19
Alignment explanation
Indices: 22734--22786 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
22724 TTTAAGCTAA
* *
22734 TTTTTTAAATTTTTTGATT
1 TTTTTTAAATTTTTTAACT
22753 TTTTTTATAATTTTTTAAACT
1 TTTTTTA-AATTTTTT-AACT
*
22774 TTTTTTAAGTTTT
1 TTTTTTAAATTTT
22787 AAATTACTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 7 0.24
20 13 0.45
21 9 0.31
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
TTTTTTAAATTTTTTAACT
Found at i:22786 original size:29 final size:29
Alignment explanation
Indices: 22731--22786 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
22721 TTCTTTAAGC
**
22731 TAATTTTTTAAATTTTTTGATTTTTTTTA
1 TAATTTTTTAAATTTTTTGATAGTTTTTA
*
22760 TAATTTTTTAAACTTTTTTTA-AGTTTT
1 TAATTTTTTAAA-TTTTTTGATAGTTTT
22787 AAATTACTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 16 0.70
30 7 0.30
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.70
Consensus pattern (29 bp):
TAATTTTTTAAATTTTTTGATAGTTTTTA
Found at i:37490 original size:23 final size:23
Alignment explanation
Indices: 37464--37516 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
37454 AACCAAAACA
37464 GAAAGACTAATCACATGACAAAG
1 GAAAGACTAATCACATGACAAAG
37487 GAAAGACTAATCACATGACAAAG
1 GAAAGACTAATCACATGACAAAG
37510 GAAAGAC
1 GAAAGAC
37517 AACGTAATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.53, C:0.17, G:0.19, T:0.11
Consensus pattern (23 bp):
GAAAGACTAATCACATGACAAAG
Found at i:45304 original size:17 final size:17
Alignment explanation
Indices: 45284--45319 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
45274 TTTTAAAAAT
45284 AATTAAAAC-ATTTTAAA
1 AATTAAAACTA-TTTAAA
45301 AATTAAAACTATTTAAA
1 AATTAAAACTATTTAAA
45318 AA
1 AA
45320 GTATTTTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.94
18 1 0.06
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (17 bp):
AATTAAAACTATTTAAA
Found at i:47557 original size:13 final size:13
Alignment explanation
Indices: 47539--47563 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47529 ACTGCAGTGA
47539 CAAATAAAATAAG
1 CAAATAAAATAAG
47552 CAAATAAAATAA
1 CAAATAAAATAA
47564 TTAATATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.04, T:0.16
Consensus pattern (13 bp):
CAAATAAAATAAG
Found at i:49066 original size:96 final size:96
Alignment explanation
Indices: 48893--49073 Score: 233
Period size: 96 Copynumber: 1.9 Consensus size: 96
48883 AGGATATTTA
** * *
48893 ATTATCTCGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAAGCGCAATATTTCGGAATCGAAGAT
1 ATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAAGCGCAATATTTCGAAACCGAAGAT
*
48958 AAGGAAACATTGCCTCGATTAAGGGTATTCG
66 AAAGAAACATTGCCTCGATTAAGGGTATTCG
* * *
48989 ATTATTTCGATTTGAAGAAAAATTGCACCTAGTGAGTTAAGGCGCAA-ATTTTCGAAACCCGAA-
1 ATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAAGCGCAATA-TTTCGAAA-CCGAAG
*
49052 ATGAAAG-AATATTGCCTCGATT
64 AT-AAAGAAACATTGCCTCGATT
49074 TTAAAGTTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
95 1 0.01
96 65 0.89
97 7 0.10
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (96 bp):
ATTATCTCGATTTGAAGAAAAATTGCACCTAGTAAGTTAAAGCGCAATATTTCGAAACCGAAGAT
AAAGAAACATTGCCTCGATTAAGGGTATTCG
Found at i:49409 original size:30 final size:30
Alignment explanation
Indices: 49361--49773 Score: 249
Period size: 29 Copynumber: 14.0 Consensus size: 30
49351 GTAATTTTGG
* **
49361 GAAAATTT-GGGGTCAAAAAATGGGGGTTTT
1 GAAAGTTTGGGGGT-AAAAAATGGGATTTTT
* *
49391 GAAAGTTTGGGGGT-AAAAATAGAATTTTT
1 GAAAGTTTGGGGGTAAAAAATGGGATTTTT
* *
49420 -AAGAGTTTTGGGGTTAAAAATGGGATTTTT
1 GAA-AGTTTGGGGGTAAAAAATGGGATTTTT
* * * * *
49450 GGAAGTTTAGAGGTAAAAAAATAGAATTTTT
1 GAAAGTTTGGGGGT-AAAAAATGGGATTTTT
* ** *
49481 GGAAGTTTTAGGGTAAAAAATGGGACTTTT
1 GAAAGTTTGGGGGTAAAAAATGGGATTTTT
* * *
49511 GGAAGTTCGGGGGT-AAAAATGGAATTTTT
1 GAAAGTTTGGGGGTAAAAAATGGGATTTTT
* * * *
49540 GGAAA-TTTCGAGGTCAAAAATGAGATTTTTT
1 -GAAAGTTTGGGGGTAAAAAATGGGA-TTTTT
* *
49571 G-AAGTTCGGGGGTAAAAATAT--AATTTTT
1 GAAAGTTTGGGGGTAAAAA-ATGGGATTTTT
* * *
49599 GGAAGTTTTGGGGTCAAAAATGGGATTTTT
1 GAAAGTTTGGGGGTAAAAAATGGGATTTTT
* * * * *
49629 GGAAGTTCGAGGGT-AAAAATAGAATTTTT
1 GAAAGTTTGGGGGTAAAAAATGGGATTTTT
* * *
49658 GGAAGTTTTGGGGTCAAAAATGGGATTTTT
1 GAAAGTTTGGGGGTAAAAAATGGGATTTTT
* * * *
49688 GGAAGTTCGGGGGT-AAAAATAGAATTTTT
1 GAAAGTTTGGGGGTAAAAAATGGGATTTTT
* * * * *
49717 GGAAGTTCGAGGGT-AAAAATGGAATTTTG
1 GAAAGTTTGGGGGTAAAAAATGGGATTTTT
** *
49746 GAAA-TTTTAGGGTCAAAAAT-GGATTTTT
1 GAAAGTTTGGGGGTAAAAAATGGGATTTTT
49774 TGGAAGTTCG
Statistics
Matches: 306, Mismatches: 62, Indels: 32
0.76 0.16 0.08
Matches are distributed among these distances:
28 23 0.08
29 129 0.42
30 117 0.38
31 37 0.12
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.34
Consensus pattern (30 bp):
GAAAGTTTGGGGGTAAAAAATGGGATTTTT
Found at i:49419 original size:29 final size:29
Alignment explanation
Indices: 49387--49786 Score: 365
Period size: 30 Copynumber: 13.6 Consensus size: 29
49377 AAAATGGGGG
* *
49387 TTTTGAAAGTTTGGGGGTAAAAATAGAAT
1 TTTTGGAAGTTTGGGGGTAAAAATGGAAT
* * *
49416 TTTT-AAGAGTTTTGGGGTTAAAAATGGGAT
1 TTTTGGA-AG-TTTGGGGGTAAAAATGGAAT
* * *
49446 TTTTGGAAGTTTAGAGGTAAAAAAATAGAAT
1 TTTTGGAAGTTTGGGGGT--AAAAATGGAAT
** * *
49477 TTTTGGAAGTTTTAGGGTAAAAAATGGGAC
1 TTTTGGAAGTTTGGGGGT-AAAAATGGAAT
*
49507 TTTTGGAAGTTCGGGGGTAAAAATGGAAT
1 TTTTGGAAGTTTGGGGGTAAAAATGGAAT
* * *
49536 TTTTGGAAATTTCGAGGTCAAAAAT-GAGAT
1 TTTTGGAAGTTTGGGGGT-AAAAATGGA-AT
* * **
49566 TTTTTGAAGTTCGGGGGTAAAAATATAAT
1 TTTTGGAAGTTTGGGGGTAAAAATGGAAT
* *
49595 TTTTGGAAGTTTTGGGGTCAAAAATGGGAT
1 TTTTGGAAGTTTGGGGGT-AAAAATGGAAT
* * *
49625 TTTTGGAAGTTCGAGGGTAAAAATAGAAT
1 TTTTGGAAGTTTGGGGGTAAAAATGGAAT
* *
49654 TTTTGGAAGTTTTGGGGTCAAAAATGGGAT
1 TTTTGGAAGTTTGGGGGT-AAAAATGGAAT
* *
49684 TTTTGGAAGTTCGGGGGTAAAAATAGAAT
1 TTTTGGAAGTTTGGGGGTAAAAATGGAAT
* *
49713 TTTTGGAAGTTCGAGGGTAAAAATGGAA-
1 TTTTGGAAGTTTGGGGGTAAAAATGGAAT
* ** *
49741 TTTTGGAAATTTTAGGGTCAAAAATGGATT
1 TTTTGGAAGTTTGGGGGT-AAAAATGGAAT
*
49771 TTTTGGAAGTTCGGGG
1 TTTTGGAAGTTTGGGG
49787 ACCTCTAAGG
Statistics
Matches: 299, Mismatches: 60, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
28 17 0.06
29 128 0.43
30 129 0.43
31 25 0.08
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.34
Consensus pattern (29 bp):
TTTTGGAAGTTTGGGGGTAAAAATGGAAT
Found at i:49456 original size:59 final size:59
Alignment explanation
Indices: 49366--49781 Score: 498
Period size: 59 Copynumber: 7.0 Consensus size: 59
49356 TTTGGGAAAA
** * * *
49366 TTTGGGGTCAAAAAATGGGGGTTTTGAAAGTTTGGGGGTAAAAATAGAATTTTT-AAGAGT
1 TTTGGGGTC-AAAAATGGGATTTTTGGAAGTTCGGGGGTAAAAATAGAATTTTTGGA-AGT
* ** *
49426 TTTGGGGTTAAAAATGGGATTTTTGGAAGTTTAGAGGTAAAAAAATAGAATTTTTGGAAGT
1 TTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGT--AAAAATAGAATTTTTGGAAGT
* * * * *
49487 TTTAGGGTAAAAAATGGGACTTTTGGAAGTTCGGGGGTAAAAATGGAATTTTTGGAAAT
1 TTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGTAAAAATAGAATTTTTGGAAGT
* * * * *
49546 TTCGAGGTCAAAAATGAGATTTTTTGAAGTTCGGGGGTAAAAATATAATTTTTGGAAGT
1 TTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGTAAAAATAGAATTTTTGGAAGT
*
49605 TTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAAATAGAATTTTTGGAAGT
1 TTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGTAAAAATAGAATTTTTGGAAGT
49664 TTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGTAAAAATAGAATTTTTGGAAG-
1 TTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGTAAAAATAGAATTTTTGGAAGT
* * * *** * *
49722 TTCGAGGGT-AAAAAT-GGAATTTTGGAAATTTTAGGGTCAAAAATGGATTTTTTGGAAGT
1 TTTG-GGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGT-AAAAATAGAATTTTTGGAAGT
49781 T
1 T
49782 CGGGGACCTC
Statistics
Matches: 310, Mismatches: 40, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
57 17 0.05
58 27 0.09
59 207 0.67
60 8 0.03
61 50 0.16
62 1 0.00
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.34
Consensus pattern (59 bp):
TTTGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGTAAAAATAGAATTTTTGGAAGT
Found at i:50894 original size:24 final size:25
Alignment explanation
Indices: 50845--50897 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
50835 GAATACTTTT
50845 TTATTATTAATAATTTAAAAAATTA
1 TTATTATTAATAATTTAAAAAATTA
* * *
50870 TTATTATT-ATTATTTAAACATTTA
1 TTATTATTAATAATTTAAAAAATTA
50894 TTAT
1 TTAT
50898 AAAAAAAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 17 0.68
25 8 0.32
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
TTATTATTAATAATTTAAAAAATTA
Found at i:52636 original size:28 final size:27
Alignment explanation
Indices: 52589--52696 Score: 87
Period size: 28 Copynumber: 3.9 Consensus size: 27
52579 TAACAAATGG
* *
52589 AAAACATAAAAA-AAAA-AAAAAAGTTA
1 AAAAAATAAAAACAAAATAAAAAA-ATA
52615 AAAAAATAAAAACAAAATAAAAAAATA
1 AAAAAATAAAAACAAAATAAAAAAATA
* * *
52642 AAAAAAGTTAAAACAACATAAAAGAA-A
1 AAAAAA-TAAAAACAAAATAAAAAAATA
* *
52669 AAAAATTAAATTACTCAAAATAAAAAAA
1 AAAAAATAAA--A-ACAAAATAAAAAAA
52697 AAATTATAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 9
0.78 0.12 0.11
Matches are distributed among these distances:
26 14 0.21
27 18 0.27
28 23 0.35
29 11 0.17
ACGTcount: A:0.78, C:0.06, G:0.03, T:0.14
Consensus pattern (27 bp):
AAAAAATAAAAACAAAATAAAAAAATA
Done.