Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001434.1 Kokia drynarioides strain JFW-HI SEQ_112941, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4175
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31


Found at i:1680 original size:45 final size:45

Alignment explanation


    Indices: 1579--1684  Score: 131
    Period size: 45  Copynumber: 2.4  Consensus size: 45

       1569 CAAACTCAGC

                       **   *           *    *     *   * 
       1579 CTGATATCCTTCCCTTGAGTATTGCAATGGCTCGTCAAATTGAGG
          1 CTGATATCCTTGGCTTAAGTATTGCAATAGCTCATCAAACTGAAG

                                     **                  
       1624 CTGATATCCTTGGCTTAAGTATTGCGGTAGCTCATCAAACTGAAG
          1 CTGATATCCTTGGCTTAAGTATTGCAATAGCTCATCAAACTGAAG

                            
       1669 CTGATATCCTTGGCTT
          1 CTGATATCCTTGGCTT

       1685 GATGAGGTAT


Statistics
Matches: 52,  Mismatches: 9, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  45   52  1.00

ACGTcount: A:0.23, C:0.22, G:0.22, T:0.34


Consensus pattern (45 bp):   
CTGATATCCTTGGCTTAAGTATTGCAATAGCTCATCAAACTGAAG
Done.