genome.fa.s14341.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014341.1 Kokia drynarioides strain JFW-HI SEQ_129378, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80726

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5895--5975	25	3.2	25	79	8	85	30	16	16	37	1.90
5992--6054	25	2.5	25	84	0	90	25	20	22	31	1.98
7371--7436	27	2.4	27	77	7	71	63	0	15	21	1.30
11272--11342	37	1.9	37	88	0	106	32	18	19	29	1.96
11324--11404	28	2.9	28	75	14	69	27	13	20	38	1.90
11352--11420	28	2.5	28	76	7	77	24	17	21	36	1.95
12035--12059	12	2.1	12	100	0	50	24	52	24	0	1.48
16862--16985	42	3.0	42	89	0	176	25	25	9	39	1.86
23680--23840	42	3.8	42	78	4	146	24	25	11	37	1.90
23972--23996	12	2.1	12	100	0	50	8	36	16	40	1.77
31093--31125	17	1.9	17	100	0	66	48	12	6	33	1.65
31267--31355	2	44.5	2	81	0	106	44	3	5	46	1.43
31270--31354	12	6.9	12	89	5	125	43	3	5	47	1.44
31882--31940	28	2.1	28	83	0	73	49	13	13	23	1.78
32137--32342	43	4.8	43	84	3	263	35	20	11	32	1.88
43008--43228	82	2.7	82	79	7	243	24	19	23	32	1.97
43239--43293	24	2.3	24	90	0	92	27	21	21	29	1.99
45226--45283	18	3.2	18	71	9	64	41	32	10	15	1.81
45220--45301	36	2.3	36	95	0	146	37	31	13	17	1.88
45237--45295	18	3.3	18	72	9	57	38	32	10	18	1.84
45244--45302	18	3.3	18	72	9	57	38	32	10	18	1.84
51983--52063	33	2.6	31	84	9	94	23	9	11	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55805--55926	63	1.9	63	94	0	217	39	16	26	18	1.91
58067--58246	82	2.2	82	84	2	227	24	18	26	31	1.98
58110--58280	82	2.1	83	90	2	265	23	16	28	30	1.96
58290--58388	24	4.1	24	86	0	126	28	24	21	26	1.99
58895--58934	21	1.9	21	85	10	55	35	17	17	30	1.93
59196--59235	18	2.2	18	95	0	71	25	17	10	47	1.78
61933--61965	10	3.0	11	86	13	50	0	18	0	81	0.68
61939--61982	18	2.6	16	89	7	61	2	18	2	77	0.98
61933--61979	22	2.1	22	84	7	60	2	17	2	78	0.94
61933--61965	6	5.8	6	86	13	52	0	18	0	81	0.68
72304--72334	14	2.3	14	94	5	55	45	9	16	29	1.79
73922--73973	20	2.6	21	82	11	56	26	25	11	36	1.90

Tables:   1

The End!