Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014343.1 Kokia drynarioides strain JFW-HI SEQ_129380, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3572
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36


Found at i:759 original size:15 final size:14

Alignment explanation


    Indices: 739--783  Score: 54
    Period size: 15  Copynumber: 2.9  Consensus size: 14

        729 CGATAAAATC

                           
        739 TCGATAAATGAATAT
          1 TCGATAAAT-AATAT

                            
        754 TCGATAAATTAATAAT
          1 TCGATAAA-TAAT-AT

                          
        770 TCGATTAAATAATA
          1 TCGA-TAAATAATA

        784 ATTTTTCGGT


Statistics
Matches: 27,  Mismatches: 0, Indels: 6
        0.82            0.00        0.18

Matches are distributed among these distances:
  15   12  0.44
  16   11  0.41
  17    4  0.15

ACGTcount: A:0.49, C:0.07, G:0.09, T:0.36


Consensus pattern (14 bp):   
TCGATAAATAATAT

Found at i:773 original size:16 final size:16

Alignment explanation


    Indices: 739--786  Score: 64
    Period size: 16  Copynumber: 3.1  Consensus size: 16

        729 CGATAAAATC

                     *      
        739 TCGATAAATGAAT-AT
          1 TCGATAAATTAATAAT

                            
        754 TCGATAAATTAATAAT
          1 TCGATAAATTAATAAT

                             
        770 TCGATTAAA-TAATAAT
          1 TCGA-TAAATTAATAAT

             
        786 T
          1 T

        787 TTTCGGTCTC


Statistics
Matches: 30,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  15   12  0.40
  16   14  0.47
  17    4  0.13

ACGTcount: A:0.48, C:0.06, G:0.08, T:0.38


Consensus pattern (16 bp):   
TCGATAAATTAATAAT
Done.