Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001435.1 Kokia drynarioides strain JFW-HI SEQ_112942, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5911
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32


Found at i:617 original size:15 final size:12

Alignment explanation


    Indices: 586--621  Score: 56
    Period size: 12  Copynumber: 3.0  Consensus size: 12

        576 TAAATAATAA

                        
        586 AATATTATTATT
          1 AATATTATTATT

                         
        598 AATATTATTAATT
          1 AATATTATT-ATT

                        
        611 AATA-TATTATT
          1 AATATTATTATT

        622 TGAAAACATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  11    3  0.13
  12   13  0.57
  13    7  0.30

ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56


Consensus pattern (12 bp):   
AATATTATTATT
Done.