Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014352.1 Kokia drynarioides strain JFW-HI SEQ_129389, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4789
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:212 original size:16 final size:16

Alignment explanation


    Indices: 191--222  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        181 TACCCTTGAC

                            
        191 TTAACCAACTTACATG
          1 TTAACCAACTTACATG

                            
        207 TTAACCAACTTACATG
          1 TTAACCAACTTACATG

        223 CCAAACAATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31


Consensus pattern (16 bp):   
TTAACCAACTTACATG

Found at i:2882 original size:17 final size:17

Alignment explanation


    Indices: 2860--2894  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2850 CTCATAATAT

                  *          
       2860 AATAAATATATATAAAA
          1 AATAAACATATATAAAA

                     *       
       2877 AATAAACATTTATAAAA
          1 AATAAACATATATAAAA

             
       2894 A
          1 A

       2895 TTTAATTTTA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29


Consensus pattern (17 bp):   
AATAAACATATATAAAA
Done.