genome.fa.s14356.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014356.1 Kokia drynarioides strain JFW-HI SEQ_129393, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151103

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1091--1136	21	2.1	22	88	4	67	36	4	10	47	1.58
3099--3149	16	3.2	16	73	13	52	49	0	1	49	1.12
14710--14777	23	3.0	23	78	8	84	13	19	23	44	1.85
16633--16776	53	3.0	45	74	17	117	36	12	20	30	1.89
16889--16964	27	2.8	27	83	0	98	35	6	21	36	1.79
22273--22306	4	8.8	4	93	6	61	79	0	0	20	0.73
25056--25116	22	2.8	22	90	7	90	72	0	11	16	1.13
25082--25111	15	1.9	16	93	6	53	70	0	13	16	1.18
25921--25963	19	2.3	19	84	8	52	58	4	0	37	1.19
28777--28840	13	4.9	13	79	7	67	42	10	3	43	1.55
28777--28840	26	2.5	26	82	14	87	42	10	3	43	1.55
37848--37881	9	3.9	9	92	3	52	82	0	17	0	0.67
38447--38485	18	2.2	18	90	0	60	84	2	12	0	0.72
38431--38480	11	4.4	11	87	7	64	86	2	8	2	0.70
39323--39477	50	3.1	49	81	10	181	30	17	32	18	1.94
39317--39581	48	5.4	48	74	11	191	32	16	32	19	1.94
39317--39547	98	2.4	98	81	5	245	31	17	31	19	1.95
39780--40285	41	12.4	41	83	1	527	34	19	15	31	1.92
40305--40674	78	4.7	78	79	4	413	27	30	17	25	1.97
40305--40674	156	2.4	156	86	0	508	27	30	17	25	1.97
40273--40699	78	5.5	77	76	9	382	28	29	17	25	1.97
43082--43135	24	2.2	25	77	9	58	20	12	0	66	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54422--54474	23	2.3	22	78	15	54	39	1	9	49	1.46
54489--54541	21	2.6	21	75	3	54	47	1	0	50	1.12
57099--57161	22	2.9	21	70	13	56	44	4	4	46	1.45
57092--57154	21	3.0	21	68	11	56	44	4	3	47	1.40
58252--58310	26	2.3	26	82	5	75	40	18	6	33	1.77
61246--61286	19	2.3	17	83	8	55	26	0	0	73	0.84
63408--63432	2	12.5	2	100	0	50	52	0	0	48	1.00
74105--74141	18	2.2	16	90	9	56	43	2	5	48	1.40
74623--74674	18	3.0	18	86	10	65	53	0	0	46	1.00
75367--75447	31	2.6	29	79	14	81	45	0	8	45	1.34
75467--75500	17	2.0	17	100	0	68	58	0	0	41	0.98
75467--75510	7	5.7	7	80	19	52	54	0	0	45	0.99
87821--87998	94	1.9	94	85	6	245	37	3	24	34	1.72
87766--88024	30	8.5	30	76	11	195	38	3	22	35	1.70
90203--90419	75	2.8	77	82	8	253	26	19	29	23	1.98
90642--91187	98	5.6	98	87	3	758	18	22	19	39	1.92
90643--91188	49	11.1	49	70	9	369	18	22	19	39	1.92
92968--93008	14	2.9	15	85	10	59	4	17	0	78	0.93
98738--98856	57	2.1	58	95	1	213	47	21	0	31	1.51
104713--104756	23	1.9	23	85	0	61	59	13	6	20	1.57
114590--114615	2	13.0	2	100	0	52	50	0	0	50	1.00
114977--115018	20	2.2	20	86	4	59	45	11	0	42	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116114--116592	59	8.0	59	80	8	461	30	19	14	35	1.91
116114--116592	119	4.0	117	80	8	486	30	19	14	35	1.91
116614--116759	64	2.3	63	87	5	206	30	17	13	39	1.87
116615--116992	62	6.3	62	72	15	222	29	17	14	39	1.89
116450--116956	172	3.0	169	87	5	681	28	16	14	40	1.88
117882--117971	30	3.1	30	84	9	107	62	3	7	26	1.38
119153--119196	20	2.2	20	83	0	52	68	2	4	25	1.20
120234--120289	22	2.5	22	85	0	76	21	8	35	33	1.85
120384--120416	16	2.0	17	88	5	50	51	0	9	39	1.34
120388--121008	84	7.3	84	85	4	811	47	4	5	41	1.48
120388--121034	169	3.8	170	90	3	973	47	4	5	42	1.47
120388--121008	253	2.4	251	85	5	811	47	4	5	41	1.48
121028--121073	6	7.8	6	79	11	51	47	2	2	47	1.26
121028--121073	11	3.9	12	80	11	51	47	2	2	47	1.26
121138--121186	12	3.8	12	75	19	53	40	8	0	51	1.32
121148--121182	17	2.1	16	89	5	52	48	8	0	42	1.33
121138--121195	28	2.1	28	86	0	80	43	10	0	46	1.38
124934--125637	61	11.4	60	79	12	534	36	18	18	26	1.94
125270--125444	71	2.5	68	90	5	296	35	22	21	20	1.96
125383--125646	60	4.4	58	76	11	216	37	16	16	29	1.91
125401--125643	59	4.1	58	77	9	206	35	15	17	31	1.92
125401--125649	119	2.1	119	85	5	326	35	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131143--131170	2	14.0	2	100	0	56	0	50	0	50	1.00
136535--136565	3	10.3	3	92	0	53	64	0	0	35	0.94
145797--145825	3	9.7	3	100	0	58	31	0	0	68	0.89
150339--150377	4	9.8	4	83	10	53	76	0	20	2	0.90
151053--151102	16	3.2	16	73	21	61	60	4	0	36	1.16

Tables:   1

The End!