Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014360.1 Kokia drynarioides strain JFW-HI SEQ_129397, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9538
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:6419 original size:72 final size:72

Alignment explanation


    Indices: 6143--6435  Score: 322
    Period size: 72  Copynumber: 4.1  Consensus size: 72

       6133 GAATTGACGA

                                        ***                              *   
       6143 TGGAATTTGTCCACTCAATTGGTTCCATAAAAAGTCTAAAACAA-TGAGTTGCAAGAGGTTCCCC
          1 TGGAATTTGTCCACTCAATTGGTTCCATCCCAAGTCTAAAA-AAGTGAGTTGCAAGAGGTTTCCC

                    
       6207 AATGATCT
         65 AATGATCT

                      *               * **           *                       
       6215 TGGAATTTGTTCACTCAATTGGTTCCTTTTCAAGTCTAAAAGAGTGAGTTGCAAGAGG-TTCCCT
          1 TGGAATTTGTCCACTCAATTGGTTCCATCCCAAGTCTAAAAAAGTGAGTTGCAAGAGGTTTCCC-

                    
       6279 AATGATCT
         65 AATGATCT

            *     *     *            *       * *    *                        
       6287 GGGAATGTGTCCGCTCAATTGGTTCGATCCCAATTGTAAAGAAGTGAGTTG-AATGAGGTTTCCC
          1 TGGAATTTGTCCACTCAATTGGTTCCATCCCAAGTCTAAAAAAGTGAGTTGCAA-GAGGTTTCCC

                 *  
       6351 AATGAACT
         65 AATGATCT

                        *                   ** *                           * 
       6359 TGGAATTTGTCCGCTCAATTGGTTCCATCCCACTTGTAAAAAAGTGAGTTGCAAGAGGTTTCCTA
          1 TGGAATTTGTCCACTCAATTGGTTCCATCCCAAGTCTAAAAAAGTGAGTTGCAAGAGGTTTCCCA

            *      
       6424 GTGATCT
         66 ATGATCT

            *    
       6431 CGGAA
          1 TGGAA

       6436 GCAGTCCTGA


Statistics
Matches: 187,  Mismatches: 29, Indels: 10
        0.83            0.13        0.04

Matches are distributed among these distances:
  71    7  0.04
  72  173  0.93
  73    7  0.04

ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31


Consensus pattern (72 bp):   
TGGAATTTGTCCACTCAATTGGTTCCATCCCAAGTCTAAAAAAGTGAGTTGCAAGAGGTTTCCCA
ATGATCT
Done.