genome.fa.s14361.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014361.1 Kokia drynarioides strain JFW-HI SEQ_129398, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142714

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1533--1631	31	3.1	30	75	16	92	43	6	12	38	1.67
7468--7492	12	2.1	12	100	0	50	36	32	16	16	1.90
10008--10069	13	4.4	15	76	11	60	43	0	4	51	1.23
10005--10062	28	2.1	28	96	0	107	37	0	5	56	1.21
10020--10072	13	3.9	13	78	9	61	45	0	3	50	1.19
10009--10069	28	2.2	28	90	0	95	44	0	4	50	1.23
10894--10922	3	9.7	3	100	0	58	31	0	0	68	0.89
12871--13015	73	2.0	73	95	0	263	39	7	11	42	1.69
12996--13022	2	13.5	2	100	0	54	48	0	0	51	1.00
14417--14477	28	2.3	27	85	5	79	24	4	36	34	1.77
14491--14595	29	3.6	28	71	17	81	32	3	30	33	1.76
14462--15004	59	9.3	59	80	6	518	35	5	26	32	1.81
14578--14672	30	3.2	30	63	11	79	36	4	26	32	1.76
14462--15004	175	3.1	170	81	6	597	35	5	26	32	1.81
14762--14854	28	3.2	27	78	15	89	34	4	24	36	1.75
14783--15031	29	8.6	29	67	13	111	36	5	25	32	1.78
16130--16177	19	2.5	19	82	0	60	50	4	0	45	1.21
16169--16198	3	10.0	3	100	0	60	33	0	0	66	0.92
16898--16968	17	4.2	17	79	0	88	52	4	4	39	1.41
16908--16974	34	2.0	34	96	0	125	55	7	4	32	1.48
17376--17418	18	2.4	18	88	7	61	44	0	2	53	1.13
17615--17979	182	2.0	182	100	0	730	42	13	10	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25402--25447	11	4.0	12	76	18	53	65	0	0	34	0.93
27991--28154	81	2.0	82	80	5	188	43	10	4	41	1.58
31076--31104	2	14.5	2	100	0	58	48	0	0	51	1.00
34769--34816	24	1.9	26	84	16	66	45	0	22	31	1.53
34900--34970	25	2.8	25	89	2	106	11	28	21	39	1.87
34936--34984	25	1.9	26	83	4	64	12	32	18	36	1.88
37538--37592	22	2.3	25	84	12	71	25	1	5	67	1.22
37723--37791	35	2.0	35	88	0	102	31	14	8	44	1.75
41652--41702	24	2.1	24	96	0	93	43	11	21	23	1.85
47974--48235	112	2.3	112	98	0	508	38	19	22	19	1.94
52785--52838	14	3.7	14	76	16	56	57	0	0	42	0.98
52785--52846	14	4.1	14	76	17	54	56	0	0	43	0.99
52787--52845	30	1.9	31	86	10	86	54	0	0	45	0.99
56068--56241	87	2.0	87	97	0	330	29	18	18	32	1.96
56674--56786	32	3.6	30	77	13	113	47	27	0	24	1.52
56682--56782	31	3.3	29	76	15	96	46	27	0	25	1.53
57001--57046	18	2.5	20	79	17	62	21	0	6	71	1.08
60925--60950	13	2.0	13	100	0	52	7	0	0	92	0.39
61617--62297	237	2.9	231	78	9	725	26	12	23	37	1.91
67279--67323	22	2.1	21	84	12	56	57	2	2	37	1.23
70337--70362	13	2.0	13	100	0	52	30	0	46	23	1.53
71509--71572	27	2.3	28	83	5	94	48	0	6	45	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79202--79310	39	2.8	39	92	0	173	35	11	22	31	1.89
92571--92601	10	3.1	10	90	0	53	35	0	12	51	1.40
93048--93598	264	2.1	268	83	6	697	35	11	13	39	1.81
94379--94412	16	2.1	16	88	0	50	61	5	0	32	1.20
98409--98464	29	2.0	29	86	10	80	48	14	5	32	1.66
100941--100979	18	2.1	19	85	4	53	56	7	0	35	1.28
109258--109316	29	2.0	31	83	6	77	45	13	11	28	1.79
124147--124203	9	5.6	10	76	17	55	14	12	0	73	1.09
128909--129196	113	2.6	111	83	6	318	25	8	20	44	1.80
128909--129209	109	2.7	111	83	6	335	25	8	20	45	1.79
131439--131476	2	19.0	2	88	0	58	5	50	0	44	1.24
137176--137204	7	4.1	7	100	0	58	44	0	27	27	1.54

Tables:   1

The End!