genome.fa.s14362.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014362.1 Kokia drynarioides strain JFW-HI SEQ_129399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144876

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5025--5081	22	2.6	22	85	0	78	40	19	28	12	1.87
7638--7910	60	4.5	61	80	7	299	42	14	14	27	1.85
7639--7910	121	2.3	121	80	4	318	43	14	14	27	1.85
9590--9639	24	2.1	24	85	7	66	38	0	0	62	0.96
9605--9688	31	2.7	31	82	12	93	45	3	0	51	1.18
14504--14803	149	2.0	148	94	0	519	29	18	12	40	1.87
16716--16772	29	1.9	30	82	10	73	28	29	29	12	1.93
22371--22489	30	4.0	30	82	2	132	42	16	11	29	1.84
23593--23641	10	4.8	10	79	2	53	46	8	2	42	1.45
30102--30157	24	2.2	24	84	6	67	19	8	23	48	1.77
33941--34082	30	4.8	30	89	0	214	37	23	0	38	1.61
46378--46453	39	1.9	39	97	0	143	27	28	18	25	1.98
46454--46799	78	4.4	78	79	1	345	25	32	17	24	1.97
46458--46643	39	4.8	39	67	6	117	25	33	16	24	1.96
46515--46723	39	5.4	39	67	5	118	25	31	18	24	1.97
46458--46799	156	2.2	156	83	1	416	25	32	17	24	1.97
48870--48912	20	2.2	20	91	0	68	44	23	0	32	1.54
48898--49055	30	5.2	30	90	4	228	37	20	0	41	1.53
48886--49055	61	2.8	60	86	4	234	37	21	0	41	1.53
54443--54485	14	3.1	14	83	16	63	6	0	32	60	1.23
54439--54477	6	6.3	6	86	13	53	2	0	33	64	1.08
54439--54493	26	2.2	25	83	9	67	9	0	34	56	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64844--64882	20	2.0	20	89	0	60	28	5	12	53	1.60
64850--64894	20	2.2	20	84	7	56	31	4	15	48	1.65
79050--79265	105	2.1	105	98	0	414	39	16	12	31	1.86
84893--84951	25	2.4	25	91	0	91	57	5	6	30	1.46
93249--93683	59	7.4	58	82	7	430	30	1	30	37	1.67
93249--93683	29	14.7	29	79	5	406	30	1	30	37	1.67
95584--95681	17	5.6	17	80	4	115	53	2	1	43	1.19
95583--95681	35	2.8	35	86	7	121	52	2	1	44	1.19
95582--95649	6	11.5	6	75	13	61	50	1	1	47	1.19
105445--105567	30	4.1	30	73	14	119	39	4	26	30	1.77
105448--105562	59	1.9	60	85	5	162	40	4	23	32	1.74
105445--105528	29	2.9	29	79	12	100	39	4	25	30	1.76
107046--107102	14	3.8	14	72	22	53	15	3	31	49	1.62
107115--107158	18	2.4	18	85	11	54	52	4	0	43	1.22
107904--108075	85	2.0	84	87	1	245	23	20	18	37	1.94
119837--119889	14	3.6	15	82	10	65	60	7	9	22	1.53
119986--120165	30	6.0	29	82	6	175	37	4	26	31	1.76
121804--121847	18	2.4	18	85	11	54	52	4	0	43	1.22
122029--122061	11	2.8	12	86	13	50	69	0	0	30	0.88
123650--123692	18	2.4	17	77	14	50	37	6	2	53	1.41
129067--129123	28	2.0	28	100	0	114	24	24	7	43	1.79
137183--137219	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139343--139375	15	2.3	15	89	5	50	75	9	3	12	1.14
141197--141231	13	2.6	13	86	4	52	31	11	11	45	1.76
141527--141725	109	1.8	110	84	5	278	39	15	13	31	1.86
143909--144086	90	2.0	91	83	3	225	28	15	22	33	1.95
143901--144071	45	3.8	46	84	2	204	30	16	20	31	1.95
144059--144238	39	4.4	42	75	9	158	24	14	30	30	1.95
144056--144238	81	2.3	81	88	0	258	24	14	31	30	1.94

Tables:   1

The End!