Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014365.1 Kokia drynarioides strain JFW-HI SEQ_129402, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1631
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34


Found at i:628 original size:8 final size:8

Alignment explanation


    Indices: 611--652  Score: 75
    Period size: 8  Copynumber: 5.2  Consensus size: 8

        601 TGTTCGAAAT

                 *  
        611 TGTAAAGA
          1 TGTAAGGA

                    
        619 TGTAAGGA
          1 TGTAAGGA

                    
        627 TGTAAGGA
          1 TGTAAGGA

                    
        635 TGTAAGGA
          1 TGTAAGGA

                    
        643 TGTAAGGA
          1 TGTAAGGA

              
        651 TG
          1 TG

        653 CATAAAAATA


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   8   33  1.00

ACGTcount: A:0.38, C:0.00, G:0.36, T:0.26


Consensus pattern (8 bp):   
TGTAAGGA

Done.