genome.fa.s14379.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014379.1 Kokia drynarioides strain JFW-HI SEQ_129417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  260798

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12316--12355	20	2.0	21	85	5	55	37	0	5	57	1.21
14305--14360	20	2.8	20	78	5	69	37	17	7	37	1.78
14290--14379	20	4.5	20	76	2	65	37	17	7	36	1.79
16439--16537	42	2.4	42	85	0	135	22	7	27	43	1.79
22635--22698	33	1.9	33	90	0	101	35	10	7	45	1.68
22798--22829	14	2.3	14	100	0	64	43	6	0	50	1.27
33689--33784	39	2.4	40	84	3	131	46	8	20	23	1.78
48887--48987	41	2.5	41	90	0	157	39	12	23	23	1.90
50602--50660	29	2.0	29	96	0	109	61	5	16	16	1.52
50671--50729	24	2.3	27	85	8	88	64	6	10	18	1.46
51326--51400	24	3.1	24	88	0	105	25	8	9	57	1.57
54281--54318	20	1.9	20	84	10	51	31	0	0	68	0.90
55227--55280	23	2.4	22	78	9	56	40	1	5	51	1.36
58896--58927	10	3.1	11	91	8	50	53	0	46	0	1.00
62443--62619	92	1.9	92	92	0	300	16	11	14	57	1.65
64814--64845	6	5.3	6	100	0	64	0	62	0	37	0.95
65799--65874	29	2.6	29	87	4	109	50	1	0	48	1.09
65830--65884	19	2.9	19	75	19	62	52	0	0	47	1.00
68624--68653	15	2.1	14	93	6	51	26	20	20	33	1.97
69917--69966	25	2.0	25	92	0	82	54	8	16	22	1.68
71271--71312	17	2.5	16	85	11	57	30	16	11	40	1.85
74755--74779	6	4.2	6	100	0	50	16	16	52	16	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76622--76654	2	16.5	2	100	0	66	48	0	0	51	1.00
77557--77602	24	1.9	24	86	8	67	36	0	13	50	1.41
78870--78894	2	12.5	2	100	0	50	48	0	0	52	1.00
89826--89883	30	1.9	30	85	0	80	15	22	12	50	1.77
97603--97666	33	1.9	33	87	0	92	39	20	4	35	1.73
101515--101580	3	21.0	3	72	9	51	65	3	1	30	1.17
101505--101564	16	4.0	16	73	20	58	65	5	1	28	1.23
101515--101580	13	5.2	13	80	3	73	65	3	1	30	1.17
102603--102910	30	10.3	29	80	9	291	39	21	1	37	1.62
102603--102975	60	6.3	58	82	6	358	38	22	1	37	1.64
102603--102917	90	3.5	89	82	6	361	39	21	1	37	1.62
102631--102975	30	11.7	29	75	9	209	37	21	1	38	1.64
108585--108632	12	4.3	11	80	20	55	33	0	0	66	0.92
110537--110602	34	1.9	34	93	0	114	39	15	12	33	1.84
111664--111751	29	3.2	25	68	27	70	48	7	2	40	1.45
111667--111769	30	3.5	30	72	15	106	49	8	2	38	1.49
111700--111787	26	3.2	25	69	20	68	46	10	3	39	1.55
111666--111787	58	2.1	58	93	1	210	47	9	3	39	1.53
114243--114283	20	2.0	20	100	0	82	56	0	19	24	1.42
114791--114844	26	2.1	26	89	3	83	27	1	9	61	1.37
114837--114899	30	2.1	29	88	8	92	44	9	0	46	1.36
129068--129409	52	6.6	52	86	0	434	34	23	14	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132054--132324	109	2.5	109	86	1	364	31	24	17	26	1.97
134089--134188	40	2.5	40	93	1	175	24	24	9	43	1.82
139174--139207	10	3.3	10	92	8	59	79	0	2	17	0.86
139764--140085	152	2.1	149	84	5	398	45	9	2	42	1.51
141933--142251	170	1.9	172	81	7	389	39	0	34	26	1.59
142243--142267	8	3.1	8	100	0	50	12	0	52	36	1.39
144369--144648	132	2.1	132	83	0	344	30	25	22	22	1.99
144671--144822	69	2.2	69	93	0	259	21	23	31	24	1.98
144501--144979	265	1.8	265	90	0	778	27	24	24	23	2.00
145652--145685	15	2.2	16	89	5	52	35	20	0	44	1.52
150352--150406	22	2.5	22	88	5	85	10	16	30	41	1.83
159790--159878	31	3.0	30	76	20	96	26	2	13	57	1.48
160719--160760	22	1.9	22	85	0	57	38	2	26	33	1.69
164689--164983	52	5.7	52	82	5	339	29	15	22	32	1.95
164685--164983	103	2.9	104	82	6	331	29	15	22	32	1.94
164690--164983	155	1.9	155	82	5	371	29	15	22	32	1.94
171716--172007	52	5.6	52	83	3	338	26	15	24	33	1.95
171716--172007	156	1.9	156	82	4	374	26	15	24	33	1.95
175623--175652	15	2.0	15	93	0	51	23	0	16	60	1.36
176395--176563	83	2.0	83	93	0	284	37	21	8	31	1.85
181587--181646	25	2.4	25	82	0	84	20	13	21	45	1.85
188030--188099	29	2.5	28	88	4	97	38	2	5	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188116--188202	40	2.2	38	81	6	102	27	2	9	60	1.39
188250--188344	34	2.8	34	86	0	145	18	7	10	63	1.49
196814--196969	34	4.7	34	74	10	144	61	11	8	17	1.55
200944--200985	5	8.0	5	89	5	57	59	0	19	21	1.38
201018--201057	20	2.0	20	85	9	55	65	0	2	32	1.06
201018--201057	21	2.0	20	85	5	53	65	0	2	32	1.06
201118--201186	12	5.3	12	70	16	57	55	0	5	39	1.24
201130--201191	29	2.1	29	93	0	106	51	0	8	40	1.31
201159--201228	12	6.0	12	71	6	63	52	1	7	38	1.38
201138--201199	29	2.1	29	90	0	97	58	0	4	37	1.20
201159--201216	22	2.5	22	86	5	71	53	1	6	37	1.38
201168--201205	17	2.3	17	81	4	51	57	2	2	36	1.26
201437--201543	30	3.3	29	70	21	70	52	0	0	46	1.06
201559--201590	9	3.4	9	91	8	55	62	0	0	37	0.95
201660--201696	16	2.5	16	87	12	53	45	0	0	54	1.00
204736--204795	31	2.0	31	90	6	97	48	15	8	28	1.73
213041--213093	27	2.0	27	96	0	97	20	13	47	18	1.82
223910--224023	43	2.6	45	77	8	126	68	16	6	8	1.36
224028--224089	30	2.1	31	87	6	92	74	16	4	4	1.17
229751--229793	11	3.9	12	88	11	58	69	0	0	30	0.88
231565--231921	45	8.0	44	78	9	296	25	16	26	31	1.97
231514--231916	90	4.5	90	76	7	336	25	16	25	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231947--231997	26	2.0	26	88	0	75	31	1	37	29	1.69
231973--232082	45	2.5	44	82	4	125	27	13	28	30	1.94
231994--232167	45	3.9	45	72	4	118	28	17	24	29	1.97
239310--239368	29	2.0	31	90	6	95	66	6	5	22	1.36
241689--241750	21	3.0	20	76	19	65	69	3	3	24	1.18
241806--241852	19	2.5	19	78	21	55	44	4	0	51	1.21
242044--242117	26	2.8	26	68	22	73	36	4	10	48	1.57
242103--242130	13	2.2	13	100	0	56	25	7	14	53	1.66
245542--245687	58	2.5	59	82	6	172	42	1	2	54	1.20
245860--245906	16	2.9	16	87	0	67	34	25	0	40	1.56
245845--245915	32	2.2	31	78	7	79	32	26	2	38	1.71
258291--258327	18	2.1	18	89	0	56	18	8	62	10	1.52

Tables:   1

The End!