Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014385.1 Kokia drynarioides strain JFW-HI SEQ_129423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105769
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 35 characters in sequence are not A, C, G, or T
Found at i:752 original size:2 final size:2
Alignment explanation
Indices: 745--773 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
735 GGGACAATTC
745 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
774 CAATTAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2548 original size:20 final size:19
Alignment explanation
Indices: 2517--2588 Score: 92
Period size: 19 Copynumber: 3.7 Consensus size: 19
2507 CTCTCTCAAC
2517 AAAAATTACAAAATAATTTT
1 AAAAATT-CAAAATAATTTT
2537 CAAAAATTCAAAATAATTTT
1 -AAAAATTCAAAATAATTTT
*
2557 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
*
2576 AAAATTTCAAAAT
1 AAAAATTCAAAAT
2589 TTATATCTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
18 4 0.09
19 24 0.51
20 12 0.26
21 7 0.15
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:2755 original size:16 final size:16
Alignment explanation
Indices: 2736--2766 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2726 TAAATTTTTT
2736 TTTCAAATATATATGA
1 TTTCAAATATATATGA
*
2752 TTTCAAATTTATATG
1 TTTCAAATATATATG
2767 CTTTAACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGA
Found at i:14858 original size:7 final size:7
Alignment explanation
Indices: 14841--14872 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
14831 CATACACCAA
14841 TTTTAATG
1 TTTT-ATG
14849 TTTTATG
1 TTTTATG
14856 TTTTATG
1 TTTTATG
14863 TTTTATG
1 TTTTATG
14870 TTT
1 TTT
14873 CACTTTAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.16, C:0.00, G:0.12, T:0.72
Consensus pattern (7 bp):
TTTTATG
Found at i:15013 original size:26 final size:26
Alignment explanation
Indices: 14976--15067 Score: 87
Period size: 26 Copynumber: 3.4 Consensus size: 26
14966 CGGTTTGACT
*
14976 TTTTTATTAAAATATTTGGAATTTAC
1 TTTTTATCAAAATATTTGGAATTTAC
** *
15002 TTTTTATCAAAA-ATTTTCAATCGGTTTGAG
1 TTTTTATCAAAATATTTGGAA----TTT-AC
*
15032 TTTTTATTAAAATATTTGGAATTTAC
1 TTTTTATCAAAATATTTGGAATTTAC
15058 TTTTTATCAA
1 TTTTTATCAA
15068 TTTAATTTTT
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
25 6 0.12
26 21 0.41
27 3 0.06
29 3 0.06
30 12 0.24
31 6 0.12
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.52
Consensus pattern (26 bp):
TTTTTATCAAAATATTTGGAATTTAC
Found at i:15058 original size:56 final size:57
Alignment explanation
Indices: 14951--15067 Score: 209
Period size: 56 Copynumber: 2.1 Consensus size: 57
14941 AAAAAAATAT
* *
14951 TCAAAATTTTTCAATCGGTTTGACTTTTTTATTAAAATATTTGGAATTTACTTTTTA
1 TCAAAAATTTTCAATCGGTTTGACGTTTTTATTAAAATATTTGGAATTTACTTTTTA
15008 TCAAAAATTTTCAATCGGTTTGA-GTTTTTATTAAAATATTTGGAATTTACTTTTTA
1 TCAAAAATTTTCAATCGGTTTGACGTTTTTATTAAAATATTTGGAATTTACTTTTTA
15064 TCAA
1 TCAA
15068 TTTAATTTTT
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
56 36 0.62
57 22 0.38
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (57 bp):
TCAAAAATTTTCAATCGGTTTGACGTTTTTATTAAAATATTTGGAATTTACTTTTTA
Found at i:16633 original size:39 final size:39
Alignment explanation
Indices: 16578--16653 Score: 118
Period size: 39 Copynumber: 1.9 Consensus size: 39
16568 CTAACATGAA
*
16578 GTAATTAGGAACTACTAGAAGGA-TTGACTTTGCCAGCGT
1 GTAATTAGGAACTACTAGAAGGACCT-ACTTTGCCAGCGT
*
16617 GTAATTAGGAATTACTAGAAGGACCTACTTTGCCAGC
1 GTAATTAGGAACTACTAGAAGGACCTACTTTGCCAGC
16654 ATGATTCGAC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 33 0.97
40 1 0.03
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (39 bp):
GTAATTAGGAACTACTAGAAGGACCTACTTTGCCAGCGT
Found at i:20393 original size:22 final size:22
Alignment explanation
Indices: 20367--20412 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
20357 CGTTTATCTC
20367 TAAAGCTTTTTAGCTTTTATTG
1 TAAAGCTTTTTAGCTTTTATTG
20389 TAAAGCTTTTTAGCTTTTATTG
1 TAAAGCTTTTTAGCTTTTATTG
20411 TA
1 TA
20413 TTATATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.24, C:0.09, G:0.13, T:0.54
Consensus pattern (22 bp):
TAAAGCTTTTTAGCTTTTATTG
Found at i:26970 original size:19 final size:18
Alignment explanation
Indices: 26938--26990 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
26928 TAGTTACCAA
*
26938 CAAAA-TAAATTAATAAT
1 CAAAATTAAAATAATAAT
26955 CCAAAATTAAAATAATAAT
1 -CAAAATTAAAATAATAAT
26974 -AATAATATAAAATAATA
1 CAA-AAT-TAAAATAATA
26991 TAAATTTGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
17 2 0.06
18 8 0.26
19 21 0.68
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (18 bp):
CAAAATTAAAATAATAAT
Found at i:26985 original size:25 final size:24
Alignment explanation
Indices: 26939--26994 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
26929 AGTTACCAAC
* *
26939 AAAATAAATTAATAATCCAAAATT
1 AAAATAAAATAATAATACAAAATT
*
26963 AAAATAATAATAATAATATAAAA-T
1 AAAATAA-AATAATAATACAAAATT
*
26987 AATATAAA
1 AAAATAAA
26995 TTTGTAACTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 1 0.04
24 14 0.52
25 12 0.44
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.29
Consensus pattern (24 bp):
AAAATAAAATAATAATACAAAATT
Found at i:26989 original size:10 final size:10
Alignment explanation
Indices: 26962--26994 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
26952 AATCCAAAAT
26962 TAAAATAATA
1 TAAAATAATA
*
26972 -ATAATAATA
1 TAAAATAATA
26981 TAAAATAATA
1 TAAAATAATA
26991 TAAA
1 TAAA
26995 TTTGTAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
TAAAATAATA
Found at i:28042 original size:15 final size:16
Alignment explanation
Indices: 28024--28058 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
28014 GAGTTTGGAC
28024 TTGGTTCA-ATTGGGT
1 TTGGTTCACATTGGGT
*
28039 TTGGTTCACTTTGGGT
1 TTGGTTCACATTGGGT
28055 TTGG
1 TTGG
28059 GTTAAAGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.09, C:0.09, G:0.34, T:0.49
Consensus pattern (16 bp):
TTGGTTCACATTGGGT
Found at i:34963 original size:15 final size:16
Alignment explanation
Indices: 34945--34979 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
34935 GGGTTTGGAC
34945 TTGGTTCA-ATTGGGT
1 TTGGTTCACATTGGGT
*
34960 TTGGTTCACTTTGGGT
1 TTGGTTCACATTGGGT
34976 TTGG
1 TTGG
34980 GTTAAAGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.09, C:0.09, G:0.34, T:0.49
Consensus pattern (16 bp):
TTGGTTCACATTGGGT
Found at i:36448 original size:11 final size:11
Alignment explanation
Indices: 36432--36458 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
36422 ATTTTGATTT
36432 TAAATATAAAA
1 TAAATATAAAA
36443 TAAATATAAAA
1 TAAATATAAAA
36454 TAAAT
1 TAAAT
36459 TTAGCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
TAAATATAAAA
Found at i:53362 original size:25 final size:25
Alignment explanation
Indices: 53334--53411 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 25
53324 TGCTTGTACA
53334 GTATATCATTAGTACTTTTTGTTCT
1 GTATATCATTAGTACTTTTTGTTCT
* * * * ***
53359 GTATCTGATTATTAATTGGCTTTGGGGT
1 GTATATCATTAGTACTT---TTTGTTCT
53387 GTATATCATTAGTACTTTTTGTTCT
1 GTATATCATTAGTACTTTTTGTTCT
53412 TTATCTGATT
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
25 18 0.50
28 18 0.50
ACGTcount: A:0.19, C:0.10, G:0.18, T:0.53
Consensus pattern (25 bp):
GTATATCATTAGTACTTTTTGTTCT
Found at i:53382 original size:28 final size:28
Alignment explanation
Indices: 53351--53435 Score: 77
Period size: 28 Copynumber: 3.1 Consensus size: 28
53341 ATTAGTACTT
53351 TTTGTTCTGTATCTGATTATTAATTGGC
1 TTTGTTCTGTATCTGATTATTAATTGGC
*** * * * *
53379 TTTGGGGTGTATATCATTAGTACTT---
1 TTTGTTCTGTATCTGATTATTAATTGGC
*
53404 TTTGTTCTTTATCTGATTATTAATTGGC
1 TTTGTTCTGTATCTGATTATTAATTGGC
53432 TTTG
1 TTTG
53436 GGGTTTCAGG
Statistics
Matches: 39, Mismatches: 15, Indels: 6
0.65 0.25 0.10
Matches are distributed among these distances:
25 17 0.44
28 22 0.56
ACGTcount: A:0.18, C:0.09, G:0.19, T:0.54
Consensus pattern (28 bp):
TTTGTTCTGTATCTGATTATTAATTGGC
Found at i:53402 original size:53 final size:53
Alignment explanation
Indices: 53334--53439 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
53324 TGCTTGTACA
53334 GTATATCATTAGTACTTTTTGTTCTGTATCTGATTATTAATTGGCTTTGGGGT
1 GTATATCATTAGTACTTTTTGTTCTGTATCTGATTATTAATTGGCTTTGGGGT
*
53387 GTATATCATTAGTACTTTTTGTTCTTTATCTGATTATTAATTGGCTTTGGGGT
1 GTATATCATTAGTACTTTTTGTTCTGTATCTGATTATTAATTGGCTTTGGGGT
53440 TTCAGGCAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.19, C:0.09, G:0.20, T:0.52
Consensus pattern (53 bp):
GTATATCATTAGTACTTTTTGTTCTGTATCTGATTATTAATTGGCTTTGGGGT
Found at i:59884 original size:188 final size:188
Alignment explanation
Indices: 59567--59943 Score: 736
Period size: 188 Copynumber: 2.0 Consensus size: 188
59557 AGCCATGCAA
*
59567 TGGCCAACACCTATGTATTTTTTTTAATACGATATTTTATTGATAGACGAAAATACGAGAATTTG
1 TGGCCAACACCTATGTATTTTTTTTAATACGATATTTTATTAATAGACGAAAATACGAGAATTTG
*
59632 AAAAAAAAATTTGTGTTGGCCATTGCATGGCTGACACTCCCTTTTTTATTTGATAGAAAAATTCA
66 AAAAAAAAAATTGTGTTGGCCATTGCATGGCTGACACTCCCTTTTTTATTTGATAGAAAAATTCA
59697 AATTTTTTGGTGTTGGCCATACCCCTTTTTGGCAGATAAAAATTCAAATTTTTGGTGT
131 AATTTTTTGGTGTTGGCCATACCCCTTTTTGGCAGATAAAAATTCAAATTTTTGGTGT
59755 TGGCCAACACCTATGTATTTTTTTTAATACGATATTTTATTAATAGACGAAAATACGAGAATTTG
1 TGGCCAACACCTATGTATTTTTTTTAATACGATATTTTATTAATAGACGAAAATACGAGAATTTG
59820 AAAAAAAAAATTGTGTTGGCCATTGCATGGCTGACACTCCCTTTTTTATTTGATAGAAAAATTCA
66 AAAAAAAAAATTGTGTTGGCCATTGCATGGCTGACACTCCCTTTTTTATTTGATAGAAAAATTCA
59885 AATTTTTTGGTGTTGGCCATACCCCTTTTTGGCAGATAAAAATTCAAATTTTTGGTGT
131 AATTTTTTGGTGTTGGCCATACCCCTTTTTGGCAGATAAAAATTCAAATTTTTGGTGT
59943 T
1 T
59944 AGTCATTGCA
Statistics
Matches: 187, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
188 187 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (188 bp):
TGGCCAACACCTATGTATTTTTTTTAATACGATATTTTATTAATAGACGAAAATACGAGAATTTG
AAAAAAAAAATTGTGTTGGCCATTGCATGGCTGACACTCCCTTTTTTATTTGATAGAAAAATTCA
AATTTTTTGGTGTTGGCCATACCCCTTTTTGGCAGATAAAAATTCAAATTTTTGGTGT
Found at i:60003 original size:60 final size:61
Alignment explanation
Indices: 59920--60084 Score: 178
Period size: 60 Copynumber: 2.8 Consensus size: 61
59910 TTTTTGGCAG
* * * **
59920 ATAAAAATTCAAA--TTTTTGGTGTTAGTCATTGCATGGCCGACACATCTTTTTTTATCTG-
1 ATAAAAAATCAAATTTTTTTTGTGTTGGTCATTGCATGGCCGACAC-TCCCTTTTTATCTGA
* ** *
59979 GTAAAAAATC-AATTTTTTTTGTGTTGGTCATACCATGACCGACACTCCCTTTTTATCTGA
1 ATAAAAAATCAAATTTTTTTTGTGTTGGTCATTGCATGGCCGACACTCCCTTTTTATCTGA
* *
60039 ATAAAAAATCAAATTTTTTTTATGTTGGACA-TGCAATGGCCGACAC
1 ATAAAAAATCAAATTTTTTTTGTGTTGGTCATTGC-ATGGCCGACAC
60085 CAATTTTTCC
Statistics
Matches: 86, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
58 2 0.02
59 20 0.23
60 36 0.42
61 28 0.33
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (61 bp):
ATAAAAAATCAAATTTTTTTTGTGTTGGTCATTGCATGGCCGACACTCCCTTTTTATCTGA
Found at i:60092 original size:60 final size:59
Alignment explanation
Indices: 59969--60092 Score: 151
Period size: 61 Copynumber: 2.1 Consensus size: 59
59959 GACACATCTT
* * * * **
59969 TTTTTATCTGGTAAAAAATCAATTTTTTTTGTGTTGGTCATACCATGACCGACACTCCC
1 TTTTTATCTGATAAAAAATCAATTTTTTTTATGTTGGACATACAATGACCGACACTCAA
* *
60028 TTTTTATCTGAATAAAAAATCAAATTTTTTTTATGTTGGACATGCAATGGCCGACAC-CAA
1 TTTTTATCTG-ATAAAAAATC-AATTTTTTTTATGTTGGACATACAATGACCGACACTCAA
60088 TTTTT
1 TTTTT
60093 CCTCATTTCT
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 10 0.18
60 15 0.27
61 30 0.55
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (59 bp):
TTTTTATCTGATAAAAAATCAATTTTTTTTATGTTGGACATACAATGACCGACACTCAA
Found at i:60899 original size:17 final size:17
Alignment explanation
Indices: 60879--60933 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 17
60869 AAAAAATATT
60879 AATTAGAATATACAGAA
1 AATTAGAATATACAGAA
60896 AATTAGAA-AT--A-AA
1 AATTAGAATATACAGAA
* *
60909 AATTAAAATATACAGGA
1 AATTAGAATATACAGAA
60926 AATTAGAA
1 AATTAGAA
60934 ATTAAATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
13 9 0.29
14 3 0.10
16 3 0.10
17 16 0.52
ACGTcount: A:0.62, C:0.04, G:0.11, T:0.24
Consensus pattern (17 bp):
AATTAGAATATACAGAA
Found at i:60946 original size:30 final size:30
Alignment explanation
Indices: 60879--60935 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
60869 AAAAAATATT
*
60879 AATTAGAATATACAGAAAATTAGAAATAAA
1 AATTAAAATATACAGAAAATTAGAAATAAA
*
60909 AATTAAAATATACAGGAAATTAGAAAT
1 AATTAAAATATACAGAAAATTAGAAAT
60936 TAAATATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.61, C:0.04, G:0.11, T:0.25
Consensus pattern (30 bp):
AATTAAAATATACAGAAAATTAGAAATAAA
Found at i:62143 original size:19 final size:18
Alignment explanation
Indices: 62104--62146 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
62094 TTTAGTTTTT
62104 AAAAATTTGAAAATATAA
1 AAAAATTTGAAAATATAA
*
62122 AAAACATTTCGAAAATAGAA
1 AAAA-ATTT-GAAAATATAA
62142 AAAAA
1 AAAAA
62147 AATATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 5 0.23
20 13 0.59
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (18 bp):
AAAAATTTGAAAATATAA
Found at i:63203 original size:22 final size:22
Alignment explanation
Indices: 63178--63234 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
63168 GGGGTGTTGG
* *
63178 TGAGCTGGAATTTTGGTTTTGA
1 TGAGCTGGAATTTCGGTTTAGA
* *
63200 TGAGATGGAATTTCGGTTTAGG
1 TGAGCTGGAATTTCGGTTTAGA
63222 TGAGCTGGAATTT
1 TGAGCTGGAATTT
63235 GGGTGATCTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.21, C:0.05, G:0.33, T:0.40
Consensus pattern (22 bp):
TGAGCTGGAATTTCGGTTTAGA
Found at i:63468 original size:83 final size:84
Alignment explanation
Indices: 63327--63507 Score: 294
Period size: 83 Copynumber: 2.2 Consensus size: 84
63317 TAAATTTAAA
* * *
63327 ATTTGGTAAAAATTGTAATATAATAATAATTTTTAATTTAAATATTCGAATTTGATAAATAATGT
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTAATTTAAATATTCAAATTTGATAAATAATGG
*
63392 ATTGTTAAATCAACACATT
66 ATTGTCAAATCAACACATT
63411 ATTTGATAAAAATTGTAATATAATAATAA-TTTTAATTTAAATATT-AAACTTTGATAAATAATG
1 ATTTGATAAAAATTGTAATATAATAATAATTTTTAATTTAAATATTCAAA-TTTGATAAATAATG
63474 GATTGTCAAATCAACACATT
65 GATTGTCAAATCAACACATT
63494 ATTTGATATAAAAT
1 ATTTGATA-AAAAT
63508 AAAATATAAA
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
82 2 0.02
83 56 0.62
84 33 0.36
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (84 bp):
ATTTGATAAAAATTGTAATATAATAATAATTTTTAATTTAAATATTCAAATTTGATAAATAATGG
ATTGTCAAATCAACACATT
Found at i:66709 original size:19 final size:18
Alignment explanation
Indices: 66680--66720 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
66670 AATATTTAAT
66680 AAATTTTTTAATA-AATCA
1 AAATTTTTTAATACAAT-A
66698 AAATTTTATTAATACAATA
1 AAATTTT-TTAATACAATA
66717 AAAT
1 AAAT
66721 ACAAATCTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.33
19 11 0.52
20 3 0.14
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
AAATTTTTTAATACAATA
Found at i:67420 original size:61 final size:60
Alignment explanation
Indices: 67351--67956 Score: 386
Period size: 60 Copynumber: 10.1 Consensus size: 60
67341 GGGGAAGTTG
* *
67351 GTGTCGGTCATTGCATGGCCAACATAAAAAAAAAATGATTTTTTACCAGATAAAAAAGGGA
1 GTGTCGGTCATTGCATGGCCAACACAAAAAAAAATTGATTTTTTACCAGA-AAAAAAGGGA
* * * * *
67412 GTGTCGGTCA-TGCAATGGCCAACAC--CAAAAATTTGAATTTTTTATCTGACAAAAAGGGA
1 GTGTCGGTCATTGC-ATGGCCAACACAAAAAAAAATTG-ATTTTTTACCAGAAAAAAAGGGA
* *
67471 -TATCGGTCATTGCATAGCCAACACAAAAAAAAATTGATTTTTTACCAGATAAAAAAGGGA
1 GTGTCGGTCATTGCATGGCCAACACAAAAAAAAATTGATTTTTTACCAGA-AAAAAAGGGA
* * * * *
67531 GTGTCGGTCA-TGCAATGGCCAACAC--CAAAAATTTGAATTTTTTATCTGACAAAAAGGGA
1 GTGTCGGTCATTGC-ATGGCCAACACAAAAAAAAATTG-ATTTTTTACCAGAAAAAAAGGGA
* * *
67590 -TATCGGTCATTGCATAGCCAACACAAAAAAAAAATTGATTTTTTTCCAGAAAGAAAAAGGG-
1 GTGTCGGTCATTGCATGGCCAACAC-AAAAAAAAATTGATTTTTTACCAG-AA-AAAAAGGGA
* * * * *** *
67651 GTGTTGGCCATGGCATGGCCAACAC-AAAAAAAATTCAATTTTTTTATTTGACAAAAAGGGA
1 GTGTCGGTCATTGCATGGCCAACACAAAAAAAAATT-GA-TTTTTTACCAGAAAAAAAGGGA
* * * * ** * * ** *
67712 GTGTCAGTTATGGCATGGTCAACAC-CCAAAAATTTGAATTTTTATTAAGATAAAAAGGG-
1 GTGTCGGTCATTGCATGGCCAACACAAAAAAAAATTGATTTTTTA-CCAGAAAAAAAGGGA
* * * *
67771 GTGTCGGTCA-TGCAATGGCCAACACCAACAAAAAATTGATTTTTTTTATCAG-TAAATAGGG-
1 GTGTCGGTCATTGC-ATGGCCAACA-CAAAAAAAAATTGA--TTTTTTACCAGAAAAAAAGGGA
* * * * * * * * * *
67832 GTGTCAGTCATGGCATTGCCAACAC-CAAAAAATTTAATTTTTTTATCTGACAGAAA-GGA
1 GTGTCGGTCATTGCATGGCCAACACAAAAAAAAATTGA-TTTTTTACCAGAAAAAAAGGGA
** *** * * *
67891 GGTGTCGACCATTGCATGGCCAACA-TTTAAAAATTTGATTTTTTATCA-AATTAAAAGGGA
1 -GTGTCGGTCATTGCATGGCCAACACAAAAAAAAATTGATTTTTTACCAGAA-AAAAAGGGA
67951 GTGTCG
1 GTGTCG
67957 ACCATGCAAT
Statistics
Matches: 428, Mismatches: 85, Indels: 66
0.74 0.15 0.11
Matches are distributed among these distances:
58 52 0.12
59 102 0.24
60 117 0.27
61 112 0.26
62 39 0.09
63 6 0.01
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (60 bp):
GTGTCGGTCATTGCATGGCCAACACAAAAAAAAATTGATTTTTTACCAGAAAAAAAGGGA
Found at i:67499 original size:119 final size:118
Alignment explanation
Indices: 67354--67798 Score: 572
Period size: 119 Copynumber: 3.7 Consensus size: 118
67344 GAAGTTGGTG
* *
67354 TCGGTCATTGCATGGCCAACATAAAAAAAAAATGATTTTTTACCAGATAAAAAAGGGAGTGTCGG
1 TCGGTCATTGCATAGCCAACACAAAAAAAAAATGATTTTTTACCAGATAAAAAAGGG-GTGTCGG
67419 TCATGCAATGGCCAACACCAAAAATTTGAATTTTTTATCTGACAAAAAGGGATA
65 TCATGCAATGGCCAACACCAAAAATTTGAATTTTTTATCTGACAAAAAGGGATA
*
67473 TCGGTCATTGCATAGCCAACACAAAAAAAAATTGATTTTTTACCAGATAAAAAAGGGAGTGTCGG
1 TCGGTCATTGCATAGCCAACACAAAAAAAAAATGATTTTTTACCAGATAAAAAAGGG-GTGTCGG
67538 TCATGCAATGGCCAACACCAAAAATTTGAATTTTTTATCTGACAAAAAGGGATA
65 TCATGCAATGGCCAACACCAAAAATTTGAATTTTTTATCTGACAAAAAGGGATA
* * *
67592 TCGGTCATTGCATAGCCAACACAAAAAAAAAATTGATTTTTTTCCAGAAAGAAAAAGGGGTGTTG
1 TCGGTCATTGCATAGCCAACACAAAAAAAAAA-TGATTTTTTACCAGATA-AAAAAGGGGTGTCG
* * * * * *
67657 GCCATGGC-ATGGCCAACACAAAAAAAATTCAATTTTTTTATTTGACAAAAAGGGAGTG
64 GTCAT-GCAATGGCCAACAC-CAAAAATTTGAA-TTTTTTATCTGACAAAAAGGGA-TA
* * * * * ** ** * **
67715 TCAGTTATGGCATGGTCAACAC-CCAAAAATTTGAATTTTTATTAAGAT-AAAAAGGGGTGTCGG
1 TCGGTCATTGCATAGCCAACACAAAAAAAAAATGATTTTTTA-CCAGATAAAAAAGGGGTGTCGG
67778 TCATGCAATGGCCAACACCAA
65 TCATGCAATGGCCAACACCAA
67799 CAAAAAATTG
Statistics
Matches: 288, Mismatches: 30, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
119 151 0.52
120 63 0.22
121 27 0.09
122 29 0.10
123 18 0.06
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (118 bp):
TCGGTCATTGCATAGCCAACACAAAAAAAAAATGATTTTTTACCAGATAAAAAAGGGGTGTCGGT
CATGCAATGGCCAACACCAAAAATTTGAATTTTTTATCTGACAAAAAGGGATA
Found at i:67694 original size:62 final size:58
Alignment explanation
Indices: 67350--67875 Score: 291
Period size: 61 Copynumber: 8.8 Consensus size: 58
67340 AGGGGAAGTT
* * * * *
67350 GGTGTCGGTCATTGCATGGCCAACATAAAAAAAAAATGATTTTTTACCAGATAAAAAAGG
1 GGTGTCGGTCA-TGCATAGCCAACACAAAAAAAAATTAATTTTTTTCCAGA-AAAAAAGG
* * * * *
67410 GAGTGTCGGTCATGCAATGGCCAACAC--CAAAAATTTGAATTTTTTAT-CTGACAAAAAGG
1 G-GTGTCGGTCATGC-ATAGCCAACACAAAAAAAAATT-AATTTTTT-TCCAGAAAAAAAGG
* * * *
67469 GATATCGGTCATTGCATAGCCAACACAAAAAAAAATTGATTTTTTACCAGATAAAAAAGG
1 GGTGTCGGTCA-TGCATAGCCAACACAAAAAAAAATTAATTTTTTTCCAGA-AAAAAAGG
* * * * *
67529 GAGTGTCGGTCATGCAATGGCCAACAC--CAAAAATTTGAATTTTTTAT-CTGACAAAAAGG
1 G-GTGTCGGTCATGC-ATAGCCAACACAAAAAAAAATT-AATTTTTT-TCCAGAAAAAAAGG
* * *
67588 GATATCGGTCATTGCATAGCCAACACAAAAAAAAAATTGATTTTTTTCCAGAAAGAAAAAGG
1 GGTGTCGGTCA-TGCATAGCCAACAC-AAAAAAAAATTAATTTTTTTCCAG-AA-AAAAAGG
* * * *** *
67650 GGTGTTGGCCATGGCATGGCCAACAC-AAAAAAAATTCAATTTTTTTATTTGACAAAAAGG
1 GGTGTCGGTCAT-GCATAGCCAACACAAAAAAAAATT-AATTTTTTT-CCAGAAAAAAAGG
* * * * ** * * *
67710 GAGTGTCAGTTATGGCATGGTCAACAC-CCAAAAATTTGAATTTTTATT-AAGATAAAAAGG
1 G-GTGTCGGTCAT-GCATAGCCAACACAAAAAAAAATT-AATTTTT-TTCCAGAAAAAAAGG
* * * * * *
67770 GGTGTCGGTCATGCAATGGCCAACACCAACAAAAAATTGATTTTTTTTATCAG-TAAATAGG
1 GGTGTCGGTCATGC-ATAGCCAACA-CAAAAAAAAATT-AATTTTTTT-CCAGAAAAAAAGG
* * * *
67831 GGTGTCAGTCATGGCATTGCCAACAC-CAAAAAATTTAATTTTTTT
1 GGTGTCGGTCAT-GCATAGCCAACACAAAAAAAAATTAATTTTTTT
67876 ATCTGACAGA
Statistics
Matches: 365, Mismatches: 70, Indels: 64
0.73 0.14 0.13
Matches are distributed among these distances:
58 46 0.13
59 71 0.19
60 83 0.23
61 132 0.36
62 33 0.09
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (58 bp):
GGTGTCGGTCATGCATAGCCAACACAAAAAAAAATTAATTTTTTTCCAGAAAAAAAGG
Found at i:67743 original size:120 final size:118
Alignment explanation
Indices: 67357--67875 Score: 528
Period size: 119 Copynumber: 4.3 Consensus size: 118
67347 GTTGGTGTCG
* * * * *
67357 GTCATTGCATGGCCAACATAAAAAAAAAATGATTTTTTACCAGATAAAAAAGGGAGTGTCGGTCA
1 GTCATGGCATAGCCAACA-CAAAAAAAATTGATTTTTTTCCAGATAAAAAAGGGAGTGTCGGTCA
* * *
67422 TGCAATGGCCAACACCAAAAATTTGAATTTTTTATCTGACAAAAAGGGATATCG
65 TGCAATGGCCAACACAAAAAAATTGAATTTTTTATCTGACAAAAAGGGATATCA
* *
67476 GTCATTGCATAGCCAACACAAAAAAAAATTGATTTTTTACCAGATAAAAAAGGGAGTGTCGGTCA
1 GTCATGGCATAGCCAACAC-AAAAAAAATTGATTTTTTTCCAGATAAAAAAGGGAGTGTCGGTCA
* * *
67541 TGCAATGGCCAACACCAAAAATTTGAATTTTTTATCTGACAAAAAGGGATATCG
65 TGCAATGGCCAACACAAAAAAATTGAATTTTTTATCTGACAAAAAGGGATATCA
* * * *
67595 GTCATTGCATAGCCAACACAAAAAAAAAATTGATTTTTTTCCAGAAAGAAAAAGGG-GTGTTGGC
1 GTCATGGCATAGCCAACAC--AAAAAAAATTGATTTTTTTCCAGATA-AAAAAGGGAGTGTCGGT
* * *
67659 CATGGC-ATGGCCAACACAAAAAAAATTCAATTTTTTTATTTGACAAAAAGGGAGTGTCA
63 CAT-GCAATGGCCAACAC-AAAAAAATTGAA-TTTTTTATCTGACAAAAAGGGA-TATCA
* * * ** * *
67718 GTTATGGCATGGTCAACACCCAAAAATTTGAATTTTTATT-AAGAT-AAAAAGGG-GTGTCGGTC
1 GTCATGGCATAGCCAACACAAAAAAAATTG-ATTTTT-TTCCAGATAAAAAAGGGAGTGTCGGTC
* * * * * *
67780 ATGCAATGGCCAACACCAACAAAAAATTGATTTTTTTTATCAG-TAAATAGGGGTGTCA
64 ATGCAATGGCCAACA-C-A-AAAAAATTGA-ATTTTTTATCTGACAAAAAGGGATATCA
* * * *
67838 GTCATGGCATTGCCAACACCAAAAAATTTAATTTTTTT
1 GTCATGGCATAGCCAACACAAAAAAAATTGATTTTTTT
67876 ATCTGACAGA
Statistics
Matches: 351, Mismatches: 36, Indels: 27
0.85 0.09 0.07
Matches are distributed among these distances:
118 2 0.01
119 142 0.40
120 102 0.29
121 37 0.11
122 48 0.14
123 20 0.06
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (118 bp):
GTCATGGCATAGCCAACACAAAAAAAATTGATTTTTTTCCAGATAAAAAAGGGAGTGTCGGTCAT
GCAATGGCCAACACAAAAAAATTGAATTTTTTATCTGACAAAAAGGGATATCA
Found at i:67889 original size:120 final size:118
Alignment explanation
Indices: 67357--67937 Score: 509
Period size: 119 Copynumber: 4.8 Consensus size: 118
67347 GTTGGTGTCG
* * * * *
67357 GTCATTGCATGGCCAACATAAAAAAAAAATGA-TTTTTTACCAGATAAAAAAGGGAGTGTCGGTC
1 GTCATGGCATAGCCAACACAAAAAAAAATTAATTTTTTTACCAGA-AAAAAAGGG-GTGTCGGTC
* *
67421 ATGCAATGGCCAACACCAAAAATTTGAATTTTTTATCTGACAAAAAGGGATATCG
64 ATGCAATGGCCAACACCAAAAAATTGAATTTTTTATCTGACAAAAAGGGATATCA
* *
67476 GTCATTGCATAGCCAACACAAAAAAAAATTGA-TTTTTTACCAGATAAAAAAGGGAGTGTCGGTC
1 GTCATGGCATAGCCAACACAAAAAAAAATTAATTTTTTTACCAGA-AAAAAAGGG-GTGTCGGTC
* *
67540 ATGCAATGGCCAACACCAAAAATTTGAATTTTTTATCTGACAAAAAGGGATATCG
64 ATGCAATGGCCAACACCAAAAAATTGAATTTTTTATCTGACAAAAAGGGATATCA
* * * *
67595 GTCATTGCATAGCCAACACAAAAAAAAAATTGATTTTTTT-CCAGAAAGAAAAAGGGGTGTTGGC
1 GTCATGGCATAGCCAACAC-AAAAAAAAATTAATTTTTTTACCAG-AA-AAAAAGGGGTGTCGGT
* * * *
67659 CATGGC-ATGGCCAACACAAAAAAAATTCAATTTTTTTATTTGACAAAAAGGGAGTGTCA
63 CAT-GCAATGGCCAACAC-CAAAAAATTGAA-TTTTTTATCTGACAAAAAGGGA-TATCA
* * * ** * *
67718 GTTATGGCATGGTCAACAC-CCAAAAATTTGAATTTTTATTA--AGATAAAAAGGGGTGTCGGTC
1 GTCATGGCATAGCCAACACAAAAAAAAATT-AATTTTT-TTACCAGAAAAAAAGGGGTGTCGGTC
* * * * * *
67780 ATGCAATGGCCAACACCAACAAAAAATTGATTTTTTTTATCAG-TAAATAGGGGTGTCA
64 ATGCAATGGCCAACA-C--CAAAAAATTGA-ATTTTTTATCTGACAAAAAGGGATATCA
* * * * * * * **
67838 GTCATGGCATTGCCAACAC-CAAAAAATTTAATTTTTTTATCTGACAGAAAGGAGGTGTCGACCA
1 GTCATGGCATAGCCAACACAAAAAAAAATTAATTTTTTTACCAGAAAAAAAGG-GGTGTCGGTCA
** *
67902 TTGC-ATGGCCAACATTTAAAAATTTG-ATTTTTTATC
65 -TGCAATGGCCAACA-CCAAAAAATTGAATTTTTTATC
67938 AAATTAAAAG
Statistics
Matches: 399, Mismatches: 44, Indels: 40
0.83 0.09 0.08
Matches are distributed among these distances:
117 9 0.02
118 3 0.01
119 152 0.38
120 103 0.26
121 61 0.15
122 51 0.13
123 20 0.05
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (118 bp):
GTCATGGCATAGCCAACACAAAAAAAAATTAATTTTTTTACCAGAAAAAAAGGGGTGTCGGTCAT
GCAATGGCCAACACCAAAAAATTGAATTTTTTATCTGACAAAAAGGGATATCA
Found at i:70407 original size:27 final size:27
Alignment explanation
Indices: 70367--70450 Score: 152
Period size: 27 Copynumber: 3.1 Consensus size: 27
70357 AGCCAATCAT
70367 ATACACCATCGAGCTAAAACAAGGTCA
1 ATACACCATCGAGCTAAAACAAGGTCA
70394 ATACACCAAT-GAGCTAAAACAAGGTCA
1 ATACACC-ATCGAGCTAAAACAAGGTCA
70421 ATACACCATCGAGCTAAAACAAGGTCA
1 ATACACCATCGAGCTAAAACAAGGTCA
70448 ATA
1 ATA
70451 AACAAGTCAT
Statistics
Matches: 55, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
26 2 0.04
27 51 0.93
28 2 0.04
ACGTcount: A:0.46, C:0.24, G:0.14, T:0.15
Consensus pattern (27 bp):
ATACACCATCGAGCTAAAACAAGGTCA
Found at i:72646 original size:2 final size:2
Alignment explanation
Indices: 72639--72674 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
72629 TAAACAAAGA
72639 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
72675 CGGGCGTATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:73746 original size:35 final size:35
Alignment explanation
Indices: 73707--73773 Score: 80
Period size: 35 Copynumber: 1.9 Consensus size: 35
73697 TAATATTAAT
*
73707 AATTGAAATCATCAAATCGTTTTTAAAATTAAAAA
1 AATTGAAATCATCAAATCGTATTTAAAATTAAAAA
* * ** *
73742 AATTGCAATTATCATGTTGTATTTAAAATTAA
1 AATTGAAATCATCAAATCGTATTTAAAATTAA
73774 TCAAATAATA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 26 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39
Consensus pattern (35 bp):
AATTGAAATCATCAAATCGTATTTAAAATTAAAAA
Found at i:75745 original size:16 final size:17
Alignment explanation
Indices: 75733--75777 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
75723 ATCATTTTTT
75733 AATT-TAAAAATTTGTA
1 AATTATAAAAATTTGTA
*
75749 AATTATAAAAAATT-TA
1 AATTATAAAAATTTGTA
*
75765 AATGA-AAAAATTT
1 AATTATAAAAATTT
75778 CTATTTTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 7 0.28
16 10 0.40
17 8 0.32
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (17 bp):
AATTATAAAAATTTGTA
Found at i:76934 original size:17 final size:18
Alignment explanation
Indices: 76912--76949 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
76902 TTGCTTGTTT
*
76912 TTTAAAATAAAAG-AAAA
1 TTTAAAACAAAAGCAAAA
*
76929 TTTAAAGCAAAAGCAAAA
1 TTTAAAACAAAAGCAAAA
76947 TTT
1 TTT
76950 TAATTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.61, C:0.05, G:0.08, T:0.26
Consensus pattern (18 bp):
TTTAAAACAAAAGCAAAA
Found at i:85625 original size:12 final size:12
Alignment explanation
Indices: 85604--85638 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
85594 AGACAAGCCG
* *
85604 GTTCCGGTTCCT
1 GTTCCAGTTCCC
85616 GTTCCAGTTCCC
1 GTTCCAGTTCCC
85628 GTTCCAGTTCC
1 GTTCCAGTTCC
85639 GGTATTGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.37, G:0.20, T:0.37
Consensus pattern (12 bp):
GTTCCAGTTCCC
Found at i:85631 original size:18 final size:18
Alignment explanation
Indices: 85604--85638 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
85594 AGACAAGCCG
* *
85604 GTTCCGGTTCCTGTTCCA
1 GTTCCCGTTCCAGTTCCA
85622 GTTCCCGTTCCAGTTCC
1 GTTCCCGTTCCAGTTCC
85639 GGTATTGGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.37, G:0.20, T:0.37
Consensus pattern (18 bp):
GTTCCCGTTCCAGTTCCA
Found at i:89972 original size:18 final size:18
Alignment explanation
Indices: 89932--89980 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
89922 ATGGTGCTGG
89932 TGATGATGATGATGAAGA
1 TGATGATGATGATGAAGA
* **
89950 CGATGATGATGATGAATT
1 TGATGATGATGATGAAGA
*
89968 TGATGATGCTGAT
1 TGATGATGATGAT
89981 TCAGGAGCAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.31, T:0.33
Consensus pattern (18 bp):
TGATGATGATGATGAAGA
Done.