Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014387.1 Kokia drynarioides strain JFW-HI SEQ_129425, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1685
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.37

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:737 original size:21 final size:21

Alignment explanation


    Indices: 704--745  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        694 AATCTTTAAA

                                  
        704 TAATTCGATTTA-TGTAATTTT
          1 TAATTCGATTTATTG-AATTTT

                                  
        725 TAATTC-ATATTATTGAATTTT
          1 TAATTCGAT-TTATTGAATTTT

        746 GTTATTGTAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  20    2  0.11
  21   15  0.79
  22    2  0.11

ACGTcount: A:0.31, C:0.05, G:0.07, T:0.57


Consensus pattern (21 bp):   
TAATTCGATTTATTGAATTTT

Found at i:1432 original size:21 final size:21

Alignment explanation


    Indices: 1399--1440  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1389 AATCTTTACA

                                  
       1399 TAATTCTATTTA-TGTAATTTT
          1 TAATTCTATTTATTG-AATTTT

                                  
       1420 TAATTC-ATGTTATTGAATTTT
          1 TAATTCTAT-TTATTGAATTTT

       1441 GTTATTGTAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  20    2  0.11
  21   15  0.79
  22    2  0.11

ACGTcount: A:0.29, C:0.05, G:0.07, T:0.60


Consensus pattern (21 bp):   
TAATTCTATTTATTGAATTTT
Done.