Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014396.1 Kokia drynarioides strain JFW-HI SEQ_129434, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2670
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:528 original size:21 final size:21

Alignment explanation


    Indices: 495--537  Score: 61
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        485 TAGGGTCCAT

                         *       
        495 TTGCCACGGAGGAGTAGAGTA
          1 TTGCCACGGAGGAATAGAGTA

                                  
        516 TTGCC-CGGAAGGAATAGAGTA
          1 TTGCCACGG-AGGAATAGAGTA

             
        537 T
          1 T

        538 CGCGATGGCT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  20    3  0.15
  21   17  0.85

ACGTcount: A:0.30, C:0.14, G:0.35, T:0.21


Consensus pattern (21 bp):   
TTGCCACGGAGGAATAGAGTA
Done.