genome.fa.s14397.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014397.1 Kokia drynarioides strain JFW-HI SEQ_129435, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  215250

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19436--20890	724	2.0	722	85	2	1932	33	18	21	27	1.96
27829--27877	22	2.2	22	96	0	89	26	8	16	48	1.73
28146--28198	26	2.0	26	85	10	72	45	0	1	52	1.11
32264--32292	14	2.1	14	100	0	58	27	13	24	34	1.93
36580--36659	21	3.8	21	75	12	67	30	26	13	30	1.94
40321--40353	17	1.9	17	88	11	50	15	6	0	78	0.93
41250--41434	40	4.6	40	85	3	230	27	21	26	24	1.99
42247--42352	42	2.5	42	86	7	144	33	7	19	38	1.80
48704--48861	40	3.9	40	79	4	156	31	19	22	26	1.98
52344--52368	2	12.5	2	100	0	50	52	48	0	0	1.00
56183--56295	55	2.1	55	81	6	131	23	28	23	24	2.00
59170--59209	19	2.1	19	86	9	55	60	5	0	35	1.19
59292--59367	37	2.1	36	83	11	93	42	1	2	53	1.23
64276--64308	17	1.9	17	93	0	57	51	15	18	15	1.77
64709--64758	21	2.6	18	77	17	55	28	42	0	30	1.56
70019--70077	9	6.7	9	75	11	59	27	8	16	47	1.76
70020--70077	26	2.2	27	87	3	82	27	8	17	46	1.77
70036--70077	18	2.3	18	91	0	66	28	9	19	42	1.82
73583--73639	24	2.4	24	87	0	78	33	5	14	47	1.66
78164--78356	30	6.4	30	86	2	217	40	22	2	34	1.68
78158--78360	60	3.4	60	83	7	241	39	22	2	34	1.69
85694--86026	40	8.4	40	72	7	205	29	25	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85758--86026	79	3.4	78	79	7	192	29	25	18	26	1.98
85693--85928	119	2.0	119	88	3	350	29	24	17	28	1.97
85693--85987	119	2.5	119	82	3	326	29	25	17	27	1.97
86645--86693	4	12.8	4	75	16	50	22	0	2	75	0.90
86643--86693	16	2.9	17	82	11	59	23	0	1	74	0.92
86644--86694	19	2.7	18	82	11	57	21	0	1	76	0.88
86635--86695	27	2.2	28	82	8	72	21	1	1	75	0.98
86731--86760	12	2.4	12	94	5	51	23	3	0	73	0.98
86724--86760	17	2.2	17	90	0	56	24	2	0	72	0.97
86771--86811	13	3.2	13	86	10	50	68	12	0	19	1.21
87897--88191	30	9.8	30	79	5	281	40	23	2	34	1.67
87896--88191	121	2.5	118	79	8	310	40	23	2	34	1.68
90570--90608	19	2.1	19	86	13	55	38	2	2	56	1.27
92260--92628	195	1.9	195	84	4	503	25	24	19	30	1.98
93167--93198	16	2.0	16	93	0	55	25	18	3	53	1.59
94550--95566	508	2.0	509	98	0	1964	37	20	9	32	1.85
95512--95569	21	2.9	20	76	21	59	41	18	1	37	1.61
95890--95943	21	2.6	21	82	5	65	33	25	11	29	1.91
96670--97029	194	1.9	195	83	6	480	26	27	17	28	1.98
97500--97531	16	2.0	16	93	0	55	25	18	3	53	1.59
101270--101323	26	2.1	26	89	6	83	51	14	11	22	1.73
104542--104584	19	2.4	18	85	14	54	37	2	2	58	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115321--115557	52	4.6	52	90	0	375	30	21	16	31	1.96
116391--116430	20	2.0	21	85	5	55	35	12	0	52	1.39
123696--123767	36	2.0	36	100	0	144	22	13	25	38	1.91
128155--128187	15	2.2	15	89	10	50	12	6	3	78	1.04
134515--134549	12	2.9	12	91	0	52	17	5	0	77	0.96
134515--134549	17	2.1	17	89	10	54	17	5	0	77	0.96
135165--135227	21	3.0	21	77	11	65	34	6	1	57	1.34
135177--135229	23	2.3	23	83	0	61	39	7	1	50	1.41
137321--137369	21	2.3	21	75	0	53	32	30	8	28	1.86
139683--139735	26	2.0	26	82	13	65	39	11	20	28	1.87
141019--141046	6	4.7	6	100	0	56	85	0	0	14	0.59
141524--141565	16	2.7	15	79	13	50	33	0	4	61	1.17
145664--145789	63	2.0	63	93	0	216	36	23	11	28	1.89
146558--146623	26	2.5	28	80	14	77	50	3	6	40	1.43
147658--147705	23	2.1	22	85	11	62	52	20	8	18	1.71
150511--151609	556	2.0	556	97	0	2090	33	17	16	33	1.92
154571--154607	7	5.3	7	93	0	56	32	29	21	16	1.95
166885--166963	39	2.0	39	97	0	149	30	12	20	36	1.90
168485--168535	20	2.5	20	78	6	59	78	0	3	17	0.90
189392--189569	36	5.0	36	85	1	232	30	11	22	35	1.90
189827--189960	66	2.0	67	89	1	207	18	14	26	40	1.89
190054--190205	23	6.6	23	82	0	169	32	5	12	49	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190054--190197	69	2.1	69	85	0	189	31	5	13	50	1.64
190054--190214	69	2.3	69	82	0	187	32	5	13	49	1.65
193276--193321	20	2.3	21	78	17	53	36	8	8	45	1.66
195683--195714	16	1.9	17	93	6	57	75	0	3	21	0.95
195683--195715	17	1.9	17	88	11	50	75	0	3	21	0.93
196965--197004	17	2.4	16	91	4	62	80	0	0	20	0.72
200109--200154	14	3.4	14	78	6	58	41	13	23	21	1.88
200111--200170	27	2.2	27	84	0	75	36	13	28	21	1.91
214775--214918	36	4.0	36	86	3	182	31	10	24	33	1.89
214967--215031	6	11.3	6	81	15	84	44	1	1	52	1.19
214967--215031	23	2.8	23	84	13	89	44	1	1	52	1.19
214967--215031	17	3.8	17	84	11	89	44	1	1	52	1.19

Tables:   1

The End!