Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014398.1 Kokia drynarioides strain JFW-HI SEQ_129436, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6724
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:228 original size:18 final size:18

Alignment explanation


    Indices: 188--229  Score: 57
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        178 ACATATTGTT

                              
        188 TTTTTTCTTTTCTTTTCC
          1 TTTTTTCTTTTCTTTTCC

            *          *    * 
        206 CTTTTTCTTTTTTTTTTC
          1 TTTTTTCTTTTCTTTTCC

                  
        224 TTTTTT
          1 TTTTTT

        230 TTTGACTGAG


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83


Consensus pattern (18 bp):   
TTTTTTCTTTTCTTTTCC
Done.