genome.fa.s14400.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014400.1 Kokia drynarioides strain JFW-HI SEQ_129438, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114721

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284--309	13	2.0	13	100	0	52	84	0	15	0	0.62
3972--4044	30	2.4	29	82	11	83	41	4	6	47	1.49
13850--14053	39	5.2	39	80	0	201	42	17	14	25	1.87
13851--14053	78	2.6	78	84	0	244	42	17	14	25	1.87
13871--14083	117	1.8	117	80	2	257	42	17	14	25	1.87
13851--14092	78	3.1	78	80	3	238	42	17	14	25	1.87
14031--14213	78	2.3	78	81	5	217	39	16	16	27	1.90
14070--14235	78	2.1	78	85	2	217	36	16	19	26	1.93
14092--14238	39	3.8	39	72	12	122	35	17	21	25	1.95
20966--21072	39	2.7	39	82	0	124	43	18	11	26	1.83
32166--32249	31	2.7	30	78	10	80	51	1	1	46	1.16
32180--32249	31	2.3	31	82	9	81	47	1	1	50	1.19
32250--32280	8	3.8	8	91	8	53	48	0	0	51	1.00
34157--34193	18	2.0	19	85	15	51	48	2	2	45	1.30
35442--35826	73	5.3	73	70	10	236	28	18	28	24	1.98
35487--35817	71	4.6	71	68	9	213	29	17	27	24	1.97
35442--35900	217	2.1	217	96	0	837	28	18	28	24	1.98
35568--35900	73	4.6	73	71	8	259	27	20	28	23	1.99
36005--36096	39	2.4	39	87	5	116	42	17	15	25	1.88
36028--36115	39	2.3	39	89	0	131	44	13	14	27	1.83
42852--42951	39	2.6	39	87	3	130	40	21	18	21	1.92
44079--44280	9	21.8	9	67	18	69	33	2	4	58	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56786--57844	265	4.0	265	87	1	1507	26	28	10	34	1.89
59492--59545	22	2.4	22	81	6	54	44	5	16	33	1.71
66693--66739	7	6.7	7	80	7	51	2	48	0	48	1.13
66693--66735	14	3.2	13	87	9	59	2	51	0	46	1.13
66696--66735	13	3.0	13	85	7	62	2	50	0	47	1.14
72615--72672	29	2.0	29	89	0	89	44	8	6	39	1.62
72623--72682	29	2.1	29	84	6	77	46	8	6	38	1.60
75162--75200	18	2.1	19	85	9	53	74	0	2	23	0.94
75547--75617	29	2.5	29	82	11	76	25	4	2	67	1.22
77121--77201	28	2.9	29	72	20	82	67	2	3	25	1.19
77157--77201	19	2.4	19	77	7	56	66	0	2	31	1.04
77346--77389	18	2.4	18	84	0	52	70	0	4	25	1.06
77593--77641	20	2.4	20	80	13	55	26	6	4	63	1.36
77746--77794	17	2.7	18	78	9	55	36	0	2	61	1.08
77751--77862	9	12.4	9	66	16	54	31	4	2	61	1.30
77781--77836	27	2.2	25	83	6	67	25	8	1	64	1.32
77789--77861	27	2.7	26	81	10	76	27	6	2	63	1.34
78505--78571	32	2.1	33	86	8	93	58	1	1	38	1.17
78521--78599	20	3.6	22	75	11	72	59	0	1	39	1.06
78521--78584	20	3.0	21	84	9	76	60	0	1	37	1.06
78520--78608	43	2.1	44	81	12	105	59	0	1	39	1.05
78851--78913	28	2.1	32	85	11	89	61	7	0	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82430--82752	59	5.4	58	76	13	273	37	2	25	35	1.68
82452--82726	30	9.3	30	77	10	253	36	1	25	36	1.65
82444--82726	89	3.2	87	78	11	297	36	1	25	36	1.65
82432--82752	30	10.7	30	74	9	156	37	2	24	35	1.68
83353--83398	24	2.0	24	86	4	67	6	10	6	76	1.16
84331--84363	17	1.9	17	93	0	57	54	0	3	42	1.15
84790--85942	50	23.2	50	72	9	499	18	30	15	35	1.93
85329--85925	148	4.0	146	77	5	482	17	29	16	35	1.93
85303--85942	99	6.4	101	71	8	258	17	30	16	35	1.92
84828--85947	149	7.5	150	74	7	563	18	30	15	35	1.93
94054--94317	29	8.9	29	79	12	211	40	1	20	36	1.64
94040--94325	88	3.2	89	78	8	278	40	2	21	36	1.65
94061--94333	59	4.6	57	76	10	228	41	1	20	36	1.63
94183--94333	30	5.1	30	77	13	111	42	1	19	37	1.60
95270--95319	22	2.3	23	82	6	59	40	0	0	60	0.97
105794--105822	2	14.5	2	100	0	58	48	0	51	0	1.00
107187--107226	21	1.9	21	89	0	62	22	35	0	42	1.54
107188--107289	12	8.0	12	67	20	55	22	30	1	45	1.64
110182--110284	23	4.5	22	78	7	82	39	26	21	12	1.89
110250--110326	23	3.3	23	92	0	118	40	20	28	10	1.86

Tables:   1

The End!