Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014402.1 Kokia drynarioides strain JFW-HI SEQ_129440, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3666
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38


Found at i:1182 original size:23 final size:23

Alignment explanation


    Indices: 1139--1182  Score: 61
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       1129 AAAATTAAAT

                        * *        
       1139 TATAATTTTTAAGATAGTAAAAA
          1 TATAATTTTTAAAAGAGTAAAAA

                            *    
       1162 TATAATTTTTAAAAGATTAAA
          1 TATAATTTTTAAAAGAGTAAA

       1183 TCAAAATTTT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  23   18  1.00

ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41


Consensus pattern (23 bp):   
TATAATTTTTAAAAGAGTAAAAA
Done.