genome.fa.s14403.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014403.1 Kokia drynarioides strain JFW-HI SEQ_129441, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141942

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67--267	30	6.8	28	74	15	129	37	27	2	32	1.70
67--236	59	2.9	58	85	8	193	38	27	1	32	1.67
114--266	58	2.6	60	83	8	199	35	28	1	33	1.69
12112--12600	50	9.8	49	74	9	351	41	18	23	16	1.90
12154--12538	101	3.8	101	81	3	418	42	18	23	15	1.88
12154--12600	101	4.4	100	80	4	373	41	18	24	15	1.89
12687--12880	101	1.9	101	89	2	300	35	16	18	30	1.93
13077--13692	194	3.1	193	82	4	692	34	17	24	23	1.96
14028--14086	6	10.0	6	73	10	50	45	0	3	50	1.18
14031--14071	17	2.4	17	87	0	64	41	0	2	56	1.13
14017--14103	17	5.4	17	73	13	58	44	2	3	49	1.31
14868--14963	3	30.7	3	72	12	59	57	4	3	35	1.34
15797--15972	29	6.0	30	75	9	105	39	24	2	34	1.68
15836--16000	59	2.8	57	75	8	154	37	23	3	36	1.70
19091--19134	18	2.4	18	81	11	54	56	0	0	43	0.99
19998--20056	20	2.8	20	78	14	66	38	5	0	55	1.22
24378--24440	30	2.1	31	85	5	85	36	1	1	60	1.16
24378--24454	29	2.6	30	79	6	86	37	1	2	58	1.20
24403--24448	20	2.3	20	80	0	56	34	0	4	60	1.16
24636--24716	31	2.6	32	80	9	96	54	4	13	27	1.59
30452--30520	31	2.3	30	87	2	102	46	13	10	30	1.75
30786--30980	96	2.0	96	94	0	345	37	10	20	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32786--32814	15	1.9	15	100	0	58	62	13	17	6	1.52
33917--34095	51	3.5	51	81	4	207	30	23	13	32	1.94
38825--38893	31	2.3	31	80	9	81	27	8	18	44	1.79
43082--43141	28	2.1	28	87	0	84	58	3	3	35	1.31
46138--46179	13	2.9	14	79	13	50	52	0	0	47	1.00
46212--46268	15	3.5	15	69	17	51	50	1	1	45	1.22
46708--46738	14	2.1	15	94	5	55	45	6	3	45	1.45
47336--47365	2	15.0	2	100	0	60	50	0	50	0	1.00
59195--59245	20	2.6	20	84	3	68	0	23	0	74	0.81
61515--61631	60	1.9	61	81	5	139	43	8	12	35	1.74
62845--62872	2	14.0	2	100	0	56	50	0	0	50	1.00
65574--65601	2	14.0	2	100	0	56	50	0	0	50	1.00
82381--82432	20	2.6	19	82	8	59	21	15	17	46	1.84
84317--84379	32	2.0	32	93	0	108	22	11	26	39	1.87
93657--93723	31	2.2	31	83	5	82	62	8	1	26	1.33
99236--99275	14	2.8	14	84	3	53	75	2	2	20	1.04
110209--110257	3	16.3	3	95	0	89	65	0	0	34	0.93
116356--116389	2	17.0	2	100	0	68	0	50	0	50	1.00
117081--117117	19	1.9	19	88	0	56	70	2	0	27	1.01
117081--117118	18	2.1	19	85	5	51	71	2	0	26	1.00
117118--117162	19	2.4	18	82	7	54	55	4	2	37	1.32
128213--128238	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137253--137299	19	2.3	20	89	7	69	53	17	6	23	1.66
140150--140211	9	6.7	9	76	7	52	29	3	0	67	1.06

Tables:   1

The End!