Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014405.1 Kokia drynarioides strain JFW-HI SEQ_129443, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2795
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32


Found at i:2396 original size:6 final size:6

Alignment explanation


    Indices: 2385--2429  Score: 63
    Period size: 6  Copynumber: 7.5  Consensus size: 6

       2375 TGATCAAAAT

                                             *   *  *           
       2385 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAA TGGAAT TGAAAG TGA
          1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA

       2430 TATGAATTGT


Statistics
Matches: 34,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.49, C:0.00, G:0.31, T:0.20


Consensus pattern (6 bp):   
TGAAAG

Done.