genome.fa.s14409.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014409.1 Kokia drynarioides strain JFW-HI SEQ_129447, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54640

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8590--8621	14	2.3	14	94	0	55	56	0	6	37	1.25
13989--14070	31	2.7	29	76	9	74	20	12	13	53	1.71
14351--14405	27	2.1	27	82	3	67	60	7	7	25	1.49
14292--14426	31	4.6	30	71	12	82	50	8	12	28	1.69
15164--15214	19	2.6	20	72	12	52	39	0	3	56	1.18
15167--15212	20	2.3	20	78	14	51	36	0	4	58	1.18
15406--15439	15	2.4	15	90	9	54	73	0	2	23	0.97
19016--19275	117	2.2	116	79	9	278	34	2	25	38	1.69
19114--19275	88	1.9	86	85	7	229	33	1	25	38	1.64
19109--19533	29	14.4	30	78	11	262	34	2	27	36	1.69
19346--19536	90	2.1	89	82	6	226	36	2	26	34	1.70
19406--19536	30	4.4	29	77	8	111	41	2	22	34	1.66
19517--19558	18	2.3	19	87	8	68	45	2	19	33	1.63
21724--22313	39	15.2	39	70	8	231	24	19	31	24	1.98
21761--22152	78	5.0	83	78	10	267	24	19	31	24	1.98
21952--22307	189	1.9	190	85	0	498	23	21	30	24	1.99
21844--22313	39	12.3	39	72	4	303	24	20	31	24	1.98
34284--34503	28	7.7	29	73	9	168	30	1	30	37	1.68
34284--34521	57	4.2	57	76	11	211	32	2	29	35	1.69
34285--34651	29	12.7	29	74	14	181	35	1	26	35	1.67
34431--34660	29	7.8	29	77	10	195	40	1	23	34	1.65
37383--37561	51	3.5	50	83	4	216	27	22	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38524--38564	18	2.3	18	91	0	64	43	12	7	36	1.70
38533--38573	18	2.3	18	86	0	55	41	12	12	34	1.80
48201--48359	80	2.0	79	97	0	291	18	17	30	32	1.94
48392--48429	14	2.6	14	88	12	51	47	2	21	28	1.64
52892--53638	81	9.2	81	84	3	889	24	15	26	33	1.95
52891--53638	243	3.1	243	85	5	978	24	15	26	33	1.95
53747--54354	93	6.4	92	70	9	357	25	22	16	35	1.95
53869--54403	191	2.8	193	85	2	695	25	21	16	36	1.94

Tables:   1

The End!