genome.fa.s14410.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014410.1 Kokia drynarioides strain JFW-HI SEQ_129448, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41002

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56--80	10	2.5	10	100	0	50	72	0	0	28	0.86
937--1194	29	8.8	29	80	6	263	34	25	3	37	1.72
937--1199	59	4.5	58	82	7	280	33	26	3	36	1.72
2810--2870	28	2.3	27	83	10	81	57	1	1	39	1.18
4618--4681	30	2.1	32	85	5	87	39	0	9	51	1.34
9470--9602	67	2.0	67	90	0	212	41	24	16	18	1.90
14562--14629	23	2.9	23	76	6	66	44	14	13	27	1.83
16684--16754	28	2.5	29	75	13	74	33	8	23	33	1.85
16705--16936	29	7.9	29	67	17	79	35	6	26	31	1.82
16781--16933	60	2.6	60	80	7	143	37	7	24	31	1.82
16852--17105	58	4.4	59	79	9	227	36	3	25	34	1.73
16859--17105	29	8.4	29	75	10	200	37	3	24	35	1.72
16899--17144	58	4.2	59	83	6	304	35	3	24	36	1.73
16899--17144	87	2.8	86	78	3	258	35	3	24	36	1.73
16912--17145	116	2.0	118	88	3	348	36	3	24	35	1.72
18916--18944	14	2.0	15	93	6	51	20	6	20	51	1.70
18977--19040	11	5.6	11	81	5	56	54	3	0	42	1.16
18981--19041	17	3.6	17	86	0	86	55	3	0	40	1.16
19477--19817	158	2.2	158	90	1	540	21	21	21	35	1.96
19635--20523	206	4.2	206	78	9	962	22	21	19	36	1.95
20636--20805	39	4.4	39	76	4	139	24	21	27	25	1.99
20614--20779	78	2.1	78	84	2	208	24	18	31	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20636--20857	117	1.9	117	85	3	313	26	19	28	25	1.99
20714--20818	39	2.7	39	89	0	129	29	22	25	21	1.99
20792--20869	39	2.0	39	82	0	93	26	14	30	28	1.95
21118--21413	100	3.0	99	77	9	291	15	26	19	37	1.92
21168--21396	99	2.3	98	78	10	250	14	25	20	39	1.90
21148--21413	97	2.7	99	77	7	274	14	25	21	38	1.91
21392--21741	100	3.5	100	84	0	432	18	24	20	36	1.95
21441--21596	50	3.1	50	67	10	129	19	24	18	37	1.94
22940--23010	6	11.5	6	80	16	83	0	14	1	84	0.69
27937--28128	96	2.0	96	82	6	237	39	12	17	30	1.87
28349--28408	28	2.2	28	87	3	86	28	6	28	36	1.82
28366--28470	29	3.7	27	67	20	70	36	4	23	35	1.76
28386--28477	29	3.2	29	67	23	77	36	5	25	32	1.79
28386--28583	58	3.4	58	79	7	163	36	4	23	34	1.76
28448--28674	58	3.9	58	80	7	205	35	2	26	35	1.71
28479--28729	58	4.3	59	80	8	230	33	2	25	37	1.69
28579--28719	30	4.8	29	74	12	119	31	1	27	39	1.65
28481--28729	29	8.5	29	75	10	197	33	2	26	37	1.69
30544--30613	6	12.0	6	77	6	72	57	2	0	40	1.14
30546--30613	17	4.2	17	76	19	74	58	2	0	38	1.13
33777--33834	21	2.7	21	79	10	64	5	6	13	74	1.20
33788--33836	22	2.2	22	82	10	55	4	6	14	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33793--33943	12	12.6	12	66	11	51	7	5	17	68	1.33

Tables:   1

The End!