Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001442.1 Kokia drynarioides strain JFW-HI SEQ_112954, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1855
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35


Found at i:1529 original size:16 final size:16

Alignment explanation


    Indices: 1508--1538  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1498 CAATTAATCA

                  *         
       1508 AATTAATCTAAAAATT
          1 AATTAAACTAAAAATT

                           
       1524 AATTAAACTAAAAAT
          1 AATTAAACTAAAAAT

       1539 CAACCAATTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32


Consensus pattern (16 bp):   
AATTAAACTAAAAATT
Done.