genome.fa.s14420.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014420.1 Kokia drynarioides strain JFW-HI SEQ_129458, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  412056

Tables:   1   

This is table  1  of  1  ( 114 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2524--2599	31	2.5	31	85	8	93	39	5	5	50	1.48
8934--8981	23	2.1	23	88	3	71	20	6	6	66	1.36
14327--14363	18	2.2	18	85	9	51	67	2	8	21	1.29
18870--18929	29	2.1	29	90	0	93	38	8	21	31	1.83
18931--19187	29	8.7	30	69	15	142	39	4	24	31	1.75
18901--19189	58	4.9	59	80	8	322	39	4	24	32	1.75
18963--19311	59	6.0	58	77	10	220	35	3	26	34	1.74
18889--19301	118	3.5	116	80	9	358	36	4	25	33	1.75
19168--19311	30	4.9	30	83	5	152	32	2	25	39	1.68
20542--20581	19	2.1	19	100	0	80	25	12	25	37	1.91
20948--20987	20	2.0	20	100	0	80	25	15	15	45	1.84
22108--22137	14	2.1	14	93	0	51	50	6	0	43	1.28
23956--24001	2	23.0	2	100	0	92	50	0	0	50	1.00
28124--28206	29	2.8	29	75	15	80	28	13	3	54	1.56
31429--31483	28	2.0	28	85	0	74	34	3	12	49	1.59
38759--38816	12	4.8	12	82	4	64	72	20	3	3	1.14
38768--38840	24	3.0	24	91	0	110	67	19	5	8	1.37
38773--38840	12	5.7	12	82	0	82	66	19	5	8	1.40
45355--45764	205	2.0	205	100	0	820	32	14	20	33	1.92
51932--51982	24	2.1	24	88	0	75	23	13	9	52	1.70
51940--51994	24	2.3	24	87	0	74	27	14	10	47	1.78
52071--52095	13	1.9	13	100	0	50	40	32	4	24	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54320--54345	5	5.2	5	100	0	52	38	42	0	19	1.51
56861--56903	19	2.3	19	84	4	61	60	4	0	34	1.17
60993--61036	21	2.1	21	91	0	70	29	31	11	27	1.91
66681--67112	217	2.0	217	94	0	767	43	16	11	27	1.83
76112--76152	21	2.0	21	85	9	57	46	4	9	39	1.58
81023--81089	21	3.3	20	78	16	75	5	5	14	73	1.23
81074--81195	12	9.9	12	71	11	86	6	4	18	69	1.29
81047--81146	23	4.7	21	77	14	80	6	6	16	72	1.25
81156--81210	20	2.5	22	82	14	69	7	1	21	69	1.23
82057--82095	20	2.0	19	85	14	53	41	0	28	30	1.57
83368--83414	24	1.9	25	83	12	62	25	21	6	46	1.74
91291--91353	31	2.0	31	84	6	83	57	12	14	15	1.66
96662--96686	2	12.5	2	100	0	50	48	0	0	52	1.00
105049--105183	67	2.0	67	98	0	261	51	13	14	20	1.75
113981--114058	31	2.5	31	82	14	97	28	14	14	43	1.83
122242--122293	18	2.9	18	77	11	61	38	0	5	55	1.24
122353--122403	23	2.3	23	86	6	70	43	1	5	49	1.38
122348--122403	21	2.5	22	80	8	69	42	1	5	50	1.35
122348--122415	21	3.2	21	78	13	61	42	1	5	50	1.35
144983--145118	31	4.5	31	71	7	120	25	16	12	45	1.82
145070--145180	57	1.9	58	83	3	143	24	16	12	46	1.81
144983--145173	88	2.1	90	84	5	246	25	16	13	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145438--145489	26	2.0	26	81	7	61	50	9	15	25	1.74
156578--156606	15	1.9	15	100	0	58	65	6	6	20	1.40
169110--169183	29	2.6	29	72	10	71	45	0	2	51	1.15
176814--176843	2	15.0	2	92	0	51	50	3	0	46	1.18
192122--192168	23	2.0	23	84	8	60	61	2	4	31	1.27
192561--192587	5	5.4	5	100	0	54	18	0	0	81	0.69
197140--197200	30	2.1	30	81	3	70	45	4	4	44	1.46
206631--206672	22	1.9	22	85	0	57	42	0	2	54	1.13
206631--206701	6	11.8	6	71	11	56	42	1	1	54	1.17
206651--206700	20	2.7	18	93	6	82	40	2	0	58	1.10
207452--207503	12	4.2	13	78	7	63	55	1	3	38	1.29
207452--207503	25	2.1	25	88	0	77	55	1	3	38	1.29
207535--207577	9	4.4	9	78	16	50	58	0	2	39	1.11
207516--207572	21	2.7	21	86	2	78	56	1	5	36	1.32
207857--207915	23	2.5	24	80	2	75	61	5	20	13	1.51
208712--208906	29	6.7	29	72	15	118	34	24	3	37	1.71
208715--208880	60	2.8	60	83	7	207	36	24	2	37	1.69
208977--209037	28	2.2	28	91	2	97	31	32	9	26	1.89
214864--214907	16	2.8	16	86	6	63	52	4	0	43	1.22
222258--222311	21	2.6	21	82	5	65	22	5	27	44	1.75
226435--226483	2	24.5	2	95	0	89	48	2	0	48	1.12
229632--229678	21	2.3	21	88	3	69	4	12	17	65	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235110--235156	18	2.6	18	80	10	51	78	2	0	19	0.85
235110--235142	16	2.1	16	94	5	59	78	0	0	21	0.75
237546--237582	19	2.0	19	89	5	58	29	0	10	59	1.31
251178--251213	2	17.5	2	88	5	54	47	2	2	47	1.31
261933--261989	20	2.8	20	83	0	69	10	26	26	36	1.89
269906--269949	2	22.0	2	100	0	88	50	0	0	50	1.00
270312--270343	2	16.0	2	100	0	64	50	0	0	50	1.00
271311--271341	8	3.9	8	100	0	62	77	0	12	9	0.99
276637--276676	20	2.0	20	90	9	64	75	0	22	2	0.93
282500--282542	22	2.0	22	85	0	59	25	2	6	65	1.30
282162--282765	250	2.4	250	95	0	1073	36	10	6	46	1.65
287376--287509	68	2.0	68	87	0	196	24	22	14	38	1.91
291561--291634	29	2.5	30	82	10	89	39	9	12	39	1.75
295071--295095	3	8.3	3	100	0	50	64	0	0	36	0.94
300571--300851	29	9.6	28	67	16	124	38	2	27	31	1.71
300567--300875	59	5.3	58	84	3	347	37	2	27	32	1.70
300659--300927	30	9.2	29	70	15	119	38	2	26	33	1.69
300561--300875	116	2.7	114	80	7	364	37	3	26	32	1.72
300658--300927	29	9.2	29	70	17	139	38	2	25	33	1.69
300841--300947	30	3.6	29	80	8	108	38	0	23	37	1.61
302757--302836	17	4.6	17	87	1	97	55	2	2	40	1.27
302762--302825	6	11.0	6	75	12	62	53	1	3	42	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302763--302821	11	5.2	11	76	10	57	52	1	3	42	1.28
311039--311229	51	3.7	51	80	7	199	28	23	15	32	1.95
316673--316720	16	2.9	16	78	6	51	43	0	33	22	1.54
316673--316722	9	5.8	9	76	9	50	42	0	34	24	1.55
317958--318035	30	2.6	30	78	13	99	50	2	2	44	1.29
321200--321234	3	11.7	3	93	0	61	37	0	62	0	0.95
324716--324755	20	2.0	20	90	4	64	37	0	2	60	1.11
324721--324769	20	2.3	22	83	16	68	36	0	6	57	1.24
330016--330078	20	3.0	22	80	13	69	38	0	1	60	1.07
336821--336859	18	2.2	18	90	0	60	23	7	2	66	1.30
336956--336997	2	21.0	2	95	0	75	50	2	0	47	1.14
338194--338417	111	2.0	110	93	0	385	28	11	14	45	1.79
359024--359049	7	3.7	7	100	0	52	61	0	38	0	0.96
372991--373035	24	1.9	24	90	4	74	46	13	6	33	1.69
375151--375181	3	10.3	3	100	0	62	32	0	0	67	0.91
376375--376425	22	2.3	22	82	3	57	37	17	25	19	1.94
378532--378564	8	4.1	8	88	11	50	90	0	9	0	0.44
378535--378569	9	3.9	9	88	11	54	88	2	8	0	0.61
380052--380089	15	2.4	16	82	4	51	36	15	7	39	1.77
380314--380344	5	6.2	5	100	0	62	41	19	19	19	1.90
393807--393874	23	3.0	23	80	0	82	23	23	16	36	1.94
396192--396221	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400435--400462	14	2.0	14	100	0	56	0	35	0	64	0.94
406240--406268	14	2.0	15	93	6	51	3	41	0	55	1.17
407692--407722	3	10.3	3	92	0	53	0	0	70	29	0.87
412024--412056	2	16.5	2	100	0	66	51	0	0	48	1.00

Tables:   1

The End!