Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014428.1 Kokia drynarioides strain JFW-HI SEQ_129466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4212
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32


Found at i:902 original size:19 final size:19

Alignment explanation


    Indices: 880--917  Score: 60
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        870 ATCAAAAAGT

                                
        880 CGAGAAAAA-AAGAAAAATA
          1 CGAGAAAAATAA-AAAAATA

                               
        899 CGAGAAAAATAAAAAAATA
          1 CGAGAAAAATAAAAAAATA

        918 AAAAATATTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  19   16  0.89
  20    2  0.11

ACGTcount: A:0.74, C:0.05, G:0.13, T:0.08


Consensus pattern (19 bp):   
CGAGAAAAATAAAAAAATA

Found at i:3539 original size:19 final size:20

Alignment explanation


    Indices: 3515--3553  Score: 62
    Period size: 19  Copynumber: 2.0  Consensus size: 20

       3505 ATCATAAAGT

                        *       
       3515 CGAGAAAAA-AAGAAAAATA
          1 CGAGAAAAATAAAAAAAATA

                                
       3534 CGAGAAAAATAAAAAAAATA
          1 CGAGAAAAATAAAAAAAATA

       3554 AAAAATATTC


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  19    9  0.50
  20    9  0.50

ACGTcount: A:0.74, C:0.05, G:0.13, T:0.08


Consensus pattern (20 bp):   
CGAGAAAAATAAAAAAAATA

Done.