genome.fa.s14435.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014435.1 Kokia drynarioides strain JFW-HI SEQ_129473, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110253

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7496--7570	21	3.6	21	85	7	98	50	10	16	22	1.75
7685--7724	20	2.0	20	100	0	80	40	20	15	25	1.90
12937--13146	109	1.9	109	90	3	334	41	13	13	31	1.83
13922--13970	19	2.9	16	78	21	55	65	0	10	24	1.23
13928--13964	19	1.9	19	94	0	65	62	0	13	24	1.31
16018--16710	45	16.0	45	80	7	493	25	14	24	35	1.93
16029--16518	136	3.7	134	82	6	539	25	14	24	36	1.93
16044--16476	181	2.4	179	82	6	507	25	13	24	35	1.93
16487--16705	42	5.4	41	82	9	229	27	12	24	35	1.92
16451--16705	81	3.2	79	77	11	250	27	12	23	35	1.92
22204--22327	25	4.9	25	73	11	92	21	16	25	37	1.93
25244--25287	22	2.0	22	82	4	54	47	4	9	38	1.56
28556--28762	108	1.9	109	83	1	272	39	13	14	32	1.85
29074--29110	19	1.9	19	88	0	56	54	2	18	24	1.57
29123--29193	29	2.5	28	82	11	81	70	1	9	18	1.22
29122--29193	30	2.4	31	79	6	94	70	1	9	18	1.21
29161--29216	23	2.5	23	85	5	71	67	0	10	21	1.20
35233--35288	24	2.3	24	90	6	87	48	8	16	26	1.75
38866--39092	25	9.0	25	75	6	131	36	22	17	23	1.95
38866--39092	75	3.0	74	72	10	192	36	22	17	23	1.95
38840--39062	50	4.4	50	79	3	207	35	22	17	23	1.95
52745--52785	21	2.0	21	85	0	55	39	7	17	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68334--68375	3	14.0	3	94	0	75	66	2	0	30	1.04
68918--68959	3	14.0	3	94	0	75	66	2	0	30	1.04
72425--72475	18	2.8	18	81	0	57	41	27	15	15	1.88
78586--78655	3	23.7	3	77	18	58	68	0	28	2	1.04
79006--79127	62	2.0	62	96	0	226	17	13	11	58	1.63
81312--81358	23	2.0	23	83	4	58	25	14	10	48	1.76
87074--87106	16	2.0	17	88	5	50	63	0	12	24	1.28
91998--92042	23	2.0	23	86	0	63	13	6	15	64	1.47
90452--95843	963	5.6	949	74	12	3239	34	15	12	37	1.86
97591--97646	26	2.2	26	96	3	105	57	3	7	32	1.43
102675--102706	2	16.0	2	93	0	55	50	3	0	46	1.17
107288--107329	18	2.4	17	88	8	57	69	21	9	0	1.17
109354--109395	18	2.4	18	80	4	50	35	0	0	64	0.94
109356--109407	26	2.0	27	88	3	79	32	0	1	65	1.04
109570--109617	26	2.0	24	84	12	62	45	0	14	39	1.45
110087--110139	11	4.9	11	80	13	56	75	0	22	1	0.90
110098--110136	4	9.8	4	83	10	53	79	0	20	0	0.73

Tables:   1

The End!