genome.fa.s14437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014437.1 Kokia drynarioides strain JFW-HI SEQ_129475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  154711

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262--325	6	11.2	6	76	15	64	51	3	1	43	1.26
248--357	35	3.1	35	80	8	125	51	4	2	40	1.36
230--357	17	7.4	16	73	19	98	50	4	2	42	1.36
3416--3492	11	6.9	11	76	16	70	42	1	0	55	1.07
3413--3492	17	4.8	16	87	4	97	41	1	0	57	1.07
3423--3502	6	14.0	6	76	15	80	46	2	0	51	1.14
3527--3606	26	3.1	26	66	16	76	41	28	12	17	1.86
5860--6587	205	3.6	205	87	4	961	34	22	23	20	1.97
5860--6722	205	4.2	204	82	7	883	34	21	23	20	1.96
7037--7113	11	6.9	11	76	16	70	42	1	0	55	1.07
7034--7113	17	4.8	16	87	4	97	41	1	0	57	1.07
7044--7123	6	14.0	6	76	15	80	46	2	0	51	1.14
7148--7227	26	3.1	26	66	16	76	41	28	12	17	1.86
7841--7894	21	2.4	22	78	12	65	51	0	5	42	1.25
8900--9236	29	11.5	29	78	7	324	36	28	2	32	1.70
8900--9236	87	3.8	89	83	6	402	36	28	2	32	1.70
8896--9251	59	6.1	58	81	6	371	35	29	2	33	1.70
17957--17990	16	2.0	18	88	11	54	41	0	8	50	1.34
20671--20700	15	2.0	15	93	0	51	43	0	0	56	0.99
21072--21172	39	2.7	36	77	14	105	29	7	13	48	1.71
21226--21270	21	2.1	22	83	4	56	33	15	13	37	1.86
29079--29114	15	2.3	16	90	4	56	27	5	11	55	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29078--29115	16	2.4	17	82	13	53	26	5	10	57	1.53
30786--30820	9	3.9	9	84	0	52	40	2	0	57	1.14
34800--34840	21	2.0	21	90	0	64	34	14	17	34	1.90
35266--35371	56	1.9	56	86	0	149	26	24	15	33	1.95
35709--35745	18	2.1	18	100	0	74	32	0	24	43	1.55
48562--48758	41	4.8	41	84	3	225	24	24	11	38	1.89
48531--48764	41	5.6	43	81	6	216	25	23	11	39	1.88
49552--49599	22	2.2	21	77	3	51	35	14	0	50	1.44
54150--54227	21	3.6	21	66	10	57	39	24	8	26	1.85
54775--55033	41	6.2	41	85	4	306	25	24	11	38	1.89
55835--55887	22	2.5	21	76	8	54	35	13	0	50	1.41
56176--56288	11	10.6	11	66	17	51	32	7	0	59	1.31
56177--56255	19	3.9	19	77	18	79	32	5	0	62	1.17
56351--56397	22	2.1	22	88	7	69	25	2	2	70	1.10
57302--57364	30	2.1	31	91	8	103	28	1	6	63	1.28
57360--57408	19	2.4	21	77	19	59	36	4	0	59	1.17
58159--58341	61	3.1	61	77	16	199	35	17	16	30	1.93
58172--58406	61	4.2	54	75	14	176	33	15	17	33	1.92
59284--59322	21	1.9	20	85	15	53	30	7	5	56	1.49
59324--59375	25	2.0	26	85	7	70	53	1	0	44	1.11
59245--59569	138	2.5	132	83	8	418	38	8	10	42	1.71
64296--64324	11	2.6	11	100	0	58	20	0	27	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68218--68262	20	2.2	20	84	7	56	53	2	13	31	1.52
71983--72030	22	2.2	21	77	3	51	50	0	14	35	1.44
72880--73020	41	3.4	41	84	1	174	42	10	21	24	1.85
73572--73647	21	3.1	27	62	31	71	27	14	17	40	1.88
73556--73664	45	2.4	45	98	1	209	26	11	21	40	1.88
81384--81682	137	2.2	136	85	4	417	40	8	6	45	1.58
85072--85116	21	2.1	21	83	0	54	73	11	15	0	1.10
86026--86085	30	2.0	30	90	0	93	20	25	16	38	1.93
86184--86218	16	2.2	16	94	0	61	28	8	0	62	1.24
86521--86739	109	2.0	110	89	0	332	32	10	15	41	1.81
86879--86913	18	1.9	18	88	0	52	31	11	5	51	1.61
87162--87212	26	1.9	27	84	11	70	21	1	3	72	1.11
89652--89713	31	2.0	31	93	0	106	54	8	11	25	1.63
90298--90357	26	2.4	24	78	10	59	43	0	3	53	1.17
90582--90632	20	2.6	19	75	22	52	72	0	1	25	0.95
92693--92733	21	1.9	22	85	5	57	56	2	12	29	1.49
102430--102467	14	2.7	14	91	0	58	50	2	7	39	1.46
102931--102967	18	2.1	17	90	5	56	54	0	0	45	1.00
102913--102964	15	3.3	15	72	15	50	51	1	0	46	1.12
103002--103082	30	2.8	29	75	17	87	50	0	0	49	1.00
103921--104005	26	3.4	26	67	18	81	47	3	3	45	1.37
105455--105575	40	3.0	40	86	2	172	38	13	11	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111420--111462	22	2.0	21	86	4	59	51	13	0	34	1.42
113352--113429	36	2.2	36	90	0	120	33	26	14	25	1.94
114974--115019	21	2.2	22	85	14	62	21	26	6	45	1.76
118452--118528	24	3.2	24	85	7	102	28	12	3	54	1.56
120382--120443	23	2.6	24	82	5	81	24	12	8	54	1.64
134217--134279	12	5.2	12	70	21	51	61	0	36	1	1.05
137337--137622	52	5.5	52	88	1	396	25	12	25	37	1.91
137343--137616	102	2.7	103	90	2	415	25	12	24	37	1.91
138600--138628	14	2.0	15	93	6	51	48	6	13	31	1.69
142706--142943	52	4.6	52	84	6	288	24	13	25	36	1.92
150435--150472	20	2.0	20	84	5	51	36	10	2	50	1.51
153965--154017	17	3.1	17	88	0	79	47	0	1	50	1.12
154039--154117	37	2.2	35	90	4	122	41	27	12	17	1.86

Tables:   1

The End!