genome.fa.s1444.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001444.1 Kokia drynarioides strain JFW-HI SEQ_112956, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83493

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643--956	30	10.6	30	69	16	174	33	27	2	37	1.70
643--909	89	3.0	87	82	9	314	34	26	2	35	1.71
610--1038	59	7.3	57	74	13	242	33	26	2	37	1.70
677--943	89	3.0	88	82	9	296	32	26	2	38	1.70
680--979	89	3.4	88	79	10	226	33	26	2	38	1.69
1001--1069	29	2.4	31	78	14	83	30	26	4	39	1.75
876--1082	114	1.8	114	82	8	269	37	26	2	34	1.70
2151--2188	17	2.2	17	100	0	76	10	34	26	28	1.90
2780--2923	71	2.0	71	95	0	261	31	12	16	39	1.86
7260--7958	49	14.1	49	73	12	491	37	19	24	18	1.94
7274--7751	98	4.8	98	93	0	758	36	19	25	18	1.94
7260--7898	147	4.3	147	77	9	650	37	19	24	18	1.94
7260--7976	147	4.8	146	74	12	543	37	19	24	18	1.94
8334--8605	39	7.0	39	74	7	239	23	30	20	25	1.98
8334--8586	117	2.2	117	90	0	407	24	31	19	25	1.98
9064--9143	34	2.4	32	80	12	88	37	2	6	53	1.40
9088--9153	17	3.9	17	77	0	78	34	4	4	56	1.40
9082--9148	34	2.0	34	93	0	116	32	2	7	56	1.42
9844--9878	3	11.7	3	100	0	70	65	0	0	34	0.93
10981--11538	30	18.8	28	70	23	265	34	26	2	36	1.70
10980--11536	59	9.4	59	84	7	666	34	26	2	36	1.71
13052--13126	30	2.5	30	95	4	134	25	37	22	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14766--14800	14	2.5	14	90	0	52	25	8	28	37	1.85
15929--15954	3	8.7	3	100	0	52	69	0	0	30	0.89
16825--17430	50	12.1	49	67	10	219	37	18	18	25	1.93
16702--17010	150	2.1	150	81	4	356	36	18	17	27	1.93
16837--17494	100	6.6	100	77	3	570	37	18	17	25	1.93
21964--22012	25	2.0	25	83	0	62	22	16	6	55	1.63
23865--23947	27	3.0	27	87	1	112	48	19	14	18	1.81
24136--24263	43	3.0	43	79	3	150	38	21	8	32	1.83
28521--28551	15	2.1	15	93	0	53	25	0	32	41	1.56
28596--28639	23	1.9	23	85	0	61	20	0	25	54	1.45
30610--30657	21	2.3	20	75	10	51	66	0	2	31	1.03
30856--30903	23	2.1	23	88	3	71	39	2	25	33	1.67
35845--35925	29	2.8	29	90	0	126	27	11	12	49	1.74
48770--48813	21	2.1	21	82	0	52	36	0	2	61	1.09
48775--48813	11	3.6	11	82	6	53	33	0	2	64	1.08
48780--48830	23	2.3	21	90	6	75	33	0	0	66	0.92
49888--49938	27	1.9	26	84	4	66	49	0	23	27	1.51
52121--52175	25	2.2	25	83	6	67	52	7	1	38	1.40
53338--53378	16	2.6	16	92	0	64	34	24	17	24	1.96
54170--54227	30	1.9	30	96	0	107	17	25	10	46	1.79
54680--54704	13	1.9	13	100	0	50	44	8	16	32	1.76
55033--55157	48	2.5	50	88	6	173	43	3	2	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57060--57248	63	3.0	64	80	15	227	49	7	16	26	1.72
57060--57246	57	3.1	59	81	14	206	49	7	16	26	1.72

Tables:   1

The End!