Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014441.1 Kokia drynarioides strain JFW-HI SEQ_129479, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2384
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Found at i:753 original size:216 final size:215
Alignment explanation
Indices: 151--2383 Score: 2234
Period size: 216 Copynumber: 10.4 Consensus size: 215
141 AAAGAAAAAC
* * * *
151 AATTACTCGAAGGAATGGATCATCTTGAACACTTTAAGTAATCGGATTTAAAAAAGAACTCGTAA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATCTAAAAAAGAACTCGTAA
* * *
216 AAGTTTGAGTAA-TTCGGAAGTTTGTCCAACAACCAAGAGAGAAACAATTCTCACATAAATAAGT
66 AAGTTTGA-CAAGTTC-GAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * ** * * *
280 TTTTAATTCTAAGGCCAAAACTTATTTACAAAATGACGAAGTTTTTAGACCAAACGATACGACTT
129 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTT
* *
345 CCCGAGCATGTAAAGTTCAGAA
194 CCCGAGCATGGAATGTTCAGAA
* * * * * * * * * * * *
367 AATTGCTTGATGTATTGTATCGACTTG-ACTACTTTATGGAACCGAAGCTATAAAAGAACTCATA
1 AATTACTCGAAGGAATGGATCGTCTTGAAC-ACTTTAAGGAACCGGATCTAAAAAAGAACTCGTA
* * * **
431 AAAGTTTGAGAAGTTCAGATGTACGTCCAGGAACCAAGAGAG-AA-AATTCTCACGTAAATAAGT
65 AAAGTTTGACAAGTTC-GAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * ** *
494 TTATAATTCAAAAATCAAAA-TATGTTTACAAAATGAAAAACTTTTTAGACCAAATGATATGATT
129 TTTTAATTCAAAGACCAAAACT-TGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACT
** * *
558 TCCCTCGCATGAAATGTTCCGAA
193 TCCCGAGCATGGAATGTTCAGAA
* * *
581 TATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAATCGGATCTAAAAAAAAACTCGTAA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATCTAAAAAAGAACTCGTAA
* * *
646 AAGTTTGACAATTTTGTAAGTTCGTCCAACAACTAAGAGAGAAACAATTCTCACGTAAATAAGTT
66 AAGTTTGACAAGTTCG-AAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
711 TTTAATTCAAAGGCCAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTC
130 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTC
* *
776 CCGAGCATGTAATGTTCAAAA
195 CCGAGCATGGAATGTTCAGAA
** * * * * * * * * * *
797 AATTGGTTGAAAGATTAGTTCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCATAA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATCTAAAAAAGAACTCGTAA
* * * * * *
862 AAGTTCGACAAGTTCGGAAGTTCGTCCAA-GAGCAAGAGAGACACAATTCACACTTAAATAAGTT
66 AAGTTTGACAAGTTC-GAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * ** *
926 TTTAATTCAAAGATCAAAACTTGTTTACAAAATG-AAAACTATTTACCCCAAATGATGCGATTTC
130 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTC
** *
990 CCTCGCATGGAATGCTC-GAAA
195 CCGAGCATGGAATGTTCAG-AA
* * * * * *
1011 AATTACTTGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGGT-TTAAAAAGAACTAGCAA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATCTAAAAAAGAACTCGTAA
* * * *
1075 AAGTTTGACAAGTTCGAAAGTTTGTCCACCAACCAAGAGAGAAACAATTGTCATGTAAATAAGTT
66 AAGTTTGACAAGTTCG-AAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * * * * * *
1140 TTTAATTCAATGGCAAAAACTTGTTTACTAAATCACAAACCTATTAGACGAAACGATGCGACTTC
130 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTC
* *
1205 CCGAGCATGTAATGTTCGGAA
195 CCGAGCATGGAATGTTCAGAA
* * * ** ** * * * * * *
1226 AATTGCTCGAAGTATTGTTTCAACTTGCATACTTTAAGGAACCGAAGCTATAAAAGAACTCATAA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATCTAAAAAAGAACTCGTAA
* * * **
1291 AAGTTCGACAAGTTCGTAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTTGCGTAAATAAGTT
66 AAGTTTGACAAGTTCG-AAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
1356 TATAATTCAAAGATCAAAA-TATGTTTACAAAATCAAAAAACTATTTAGACCAAATGATGCGATT
130 TTTAATTCAAAGACCAAAACT-TGTTTACAAAAT-GAAAAACTTTTTAGACCAAATGATGCGACT
**
1420 TCCCTCGCATGGAATGTTTCA-AA
193 TCCCGAGCATGGAATG-TTCAGAA
* * * *
1443 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGATTTGAAAAAGAACTAGTAA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATCTAAAAAAGAACTCGTAA
* * * ** *
1508 AAGTTTGACAAGATCGGAAGTACATCCAACGTCCAAGA-A-AATCAATTCTCACGTAAATAAGTT
66 AAGTTTGACAAGTTC-GAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
1571 TTTAATTCAAAGGCCAAAACATATTTACAAAATGACAAAC-TTTTAGACCAAACGATGCGACTTC
130 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTC
* *
1635 CCGAGCATGTAACGTTCAGAA
195 CCGAGCATGGAATGTTCAGAA
* * * * * * * * ** ** *
1656 AATTGCTCGAAGTATTGTATCGGCTTG-ACTAATTTATGGAATCAAAGATATAAAAGAACTCAG-
1 AATTACTCGAAGGAATGGATCGTCTTGAAC-ACTTTAAGGAACCGGATCTAAAAAAGAACTC-GT
* * * * * *
1719 AAAAGTTCGACAAGTTTAGAAGTTCATCCAATAATCGAGAGAGAAACAATTCTCACGTAAATAAG
64 AAAAGTTTGACAAG-TTCGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* ** * * *
1784 TTTATAATTCAAAGAAGAAAACATGTTTACAAAATGATAAACTTTTTAGACCAAATGATGCGATT
128 TTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACT
** **
1849 TCCCTCGCATGGAATGTTTTGAA
193 TCCCGAGCATGGAATGTTCAGAA
* ** *
1872 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAGCTTGATCTAAAAAAGAACTCATAA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATCTAAAAAAGAACTCGTAA
* * * * *
1937 AAGTTTGACAATTTTGAATGTTCATCCAACAACTAAGAGAGAAATAATTCTCACGTAAATAAGTT
66 AAGTTTGACAAGTTCGAA-GTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
2002 TTTAATTCAAAGGCCAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTC
130 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTC
* *
2067 CCGAGCATGTAATGTTCAAAA
195 CCGAGCATGGAATGTTCAGAA
* * * * * *
2088 AATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATCTAAAAAAGAACTCGTAA
* * * * * * * * *
2153 AAGTTCGACAAGTTCAAAAGTTCGTCCAA-GAGCAAGAGAGACACATTTCACACTTAAATAATTT
66 AAGTTTGACAAGTTC-GAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
2217 TTTAATTCAAAGATTAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTC
130 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTC
**
2282 CCTCGCATGGAATGTTC-GATA
195 CCGAGCATGGAATGTTCAGA-A
* * * * *
2303 AATTACTCGAAGAAATGGATCGTCTTGAACACTTTAAGGAACTGGGTTTAAAAAAGAACTAGTAA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATCTAAAAAAGAACTCGTAA
2368 AAGTTTGACAAGTTCG
66 AAGTTTGACAAGTTCG
2384 G
Statistics
Matches: 1613, Mismatches: 372, Indels: 66
0.79 0.18 0.03
Matches are distributed among these distances:
212 7 0.00
213 142 0.09
214 305 0.19
215 417 0.26
216 617 0.38
217 121 0.08
218 4 0.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (215 bp):
AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATCTAAAAAAGAACTCGTAA
AAGTTTGACAAGTTCGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
TTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGACTTCC
CGAGCATGGAATGTTCAGAA
Found at i:979 original size:430 final size:428
Alignment explanation
Indices: 151--2384 Score: 2968
Period size: 430 Copynumber: 5.2 Consensus size: 428
141 AAAGAAAAAC
* * *
151 AATTACTCGAAGGAATGGATCATCTTGAACACTTTAAGTAA-TCGGATTTAAAAAAGAACTCGTA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACT-GGATTTAAAAAAGAACTAGTA
* * *
215 AAAGTTTGAGTAA-TTCGGAAGTTTGTCCAACAACCAAGAGAGAAACAATTCTCACATAAATAAG
65 AAAGTTTGA-CAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * *
279 TTTTTAATTCTAAGGCCAAAACTTATTTACAAAATGACGAAGTTTTTAGACCAAACGATACGACT
129 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAACGATGCGACT
* * * * *
344 TCCCGAGCATGTAAAGTTCAGAAAATTGCTTGATGTATTGTATCGACTTGACTACTTTATGGAAC
194 TCCCGAGCATGTAATGTTCAGAAAATTGCTCGAAGTATTGT-TCGACTTGAATACTTTAAGGAAC
* * * * *
409 CGAAGCTATAAAAGAACTCATAAAAGTTTGAGAAGTTCAGATGTACGTCCAGGAACCAAGAGAG-
258 CGAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAG-ACCAAGAGAGA
*
473 AA-AATTCTCACGTAAATAAGTTTATAATTCAAAAATCAAAA-TATGTTTACAAAATGAAAAACT
322 AACAATTCTCACGTAAATAAGTTTATAATTCAAAGATCAAAACT-TGTTTACAAAATG-AAAACT
* ** *
536 TTTTAGACCAAATGATATGATTTCCCTCGCATGAAATGTTCCGAA
385 ATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTT-CGAA
* * * *
581 TATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAA-TCGGATCTAAAAAAAAACTCGTA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACT-GGATTTAAAAAAGAACTAGTA
* * * *
645 AAAGTTTGACAATTTTGTAAGTTCGTCCAACAACTAAGAGAGAAACAATTCTCACGTAAATAAGT
65 AAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
710 TTTTAATTCAAAGGCCAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTT
130 TTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAACGATGCGACTT
* * * *
775 CCCGAGCATGTAATGTTCAAAAAATTGGTTGAAAG-ATTAGTTCGTCTTGAATACTTTAAGGAAC
195 CCCGAGCATGTAATGTTCAGAAAATTGCTCG-AAGTATT-GTTCGACTTGAATACTTTAAGGAAC
* * *
839 CGAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAGCAAGAGAGAC
258 CGAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGACCAAGAGAGAA
* * *
904 ACAATTCACACTTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAACTATT
323 ACAATTCTCACGTAAATAAGTTTATAATTCAAAGATCAAAACTTGTTTACAAAATGAAAACTATT
** *
969 TACCCCAAATGATGCGATTTCCCTCGCATGGAATGCTCGAAA
388 TAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCG-AA
* * *
1011 AATTACTTGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGGTTT-AAAAAGAACTAGCAA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGATTTAAAAAAGAACTAGTAA
* * * * *
1075 AAGTTTGACAAGTTCGAAAGTTTGTCCACCAACCAAGAGAGAAACAATTGTCATGTAAATAAGTT
66 AAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * * *
1140 TTTAATTCAATGGCAAAAACTTGTTTACTAAATCACAAACCTATTAGACGAAACGATGCGACTTC
131 TTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAACGATGCGACTTC
* * *
1205 CCGAGCATGTAATGTTCGGAAAATTGCTCGAAGTATTGTTTCAACTTGCATACTTTAAGGAACCG
196 CCGAGCATGTAATGTTCAGAAAATTGCTCGAAGTATTG-TTCGACTTGAATACTTTAAGGAACCG
*
1270 AAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTC-GTAAGTTCATCCAAGAACCAAGAGAGAA
260 AAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCAG-AAGTTCGTCCAAG-ACCAAGAGAGAA
** *
1334 ACAATTCTTGCGTAAATAAGTTTATAATTCAAAGATCAAAA-TATGTTTACAAAATCAAAAAACT
323 ACAATTCTCACGTAAATAAGTTTATAATTCAAAGATCAAAACT-TGTTTACAAAAT--GAAAACT
*
1398 ATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTTCAAA
385 ATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATG-TTCGAA
*
1443 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGATTTGAAAAAGAACTAGTAA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGATTTAAAAAAGAACTAGTAA
* * * ** *
1508 AAGTTTGACAAGATCGGAAGTACATCCAACGTCCAAGA-A-AATCAATTCTCACGTAAATAAGTT
66 AAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
1571 TTTAATTCAAAGGCCAAAACATATTTACAAAATGACAAAC-TTTTAGACCAAACGATGCGACTTC
131 TTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAACGATGCGACTTC
* * * * * * *
1635 CCGAGCATGTAACGTTCAGAAAATTGCTCGAAGTATTGTATCGGCTTGACTAATTTATGGAATCA
196 CCGAGCATGTAATGTTCAGAAAATTGCTCGAAGTATTGT-TCGACTTGAATACTTTAAGGAACCG
* * * * * * *
1700 AAGATATAAAAGAACTCAGAAAAGTTCGACAAGTTTAGAAGTTCATCCAATAATCGAGAGAGAAA
260 AAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCAGAAGTTCGTCCAA-GACCAAGAGAGAAA
** * *
1765 CAATTCTCACGTAAATAAGTTTATAATTCAAAGAAGAAAACATGTTTACAAAATGATAAACTTTT
324 CAATTCTCACGTAAATAAGTTTATAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAACTATT
*
1830 TAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTTTGAA
388 TAGACCAAATGATGCGATTTCCCTCGCATGGAATG-TTCGAA
* * *
1872 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAGCTTGATCTAAAAAAGAACTCA-TA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGATTTAAAAAAGAACT-AGTA
** * * *
1936 AAAGTTTGACAA-TTTTGAATGTTCATCCAACAACTAAGAGAGAAATAATTCTCACGTAAATAAG
65 AAAGTTTGACAAGTTCGGAA-GTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * *
2000 TTTTTAATTCAAAGGCCAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACT
129 TTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAACGATGCGACT
* * * *
2065 TCCCGAGCATGTAATGTTCAAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAC
194 TCCCGAGCATGTAATGTTCAGAAAATTGCTCGAAGTATT-GTTCGACTTGAATACTTTAAGGAAC
* * * *
2130 CGAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCAAAAGTTCGTCCAAGAGCAAGAGAGAC
258 CGAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGACCAAGAGAGAA
* * * * * *
2195 ACATTTCACACTTAAATAATTTTTTAATTCAAAGATTAAAACTTGTTTACAAAATGAAAAACTAT
323 ACAATTCTCACGTAAATAAGTTTATAATTCAAAGATCAAAACTTGTTTACAAAATG-AAAACTAT
2260 TTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGATA
387 TTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGA-A
* *
2303 AATTACTCGAAGAAATGGATCGTCTTGAACACTTTAAGGAACTGGGTTTAAAAAAGAACTAGTAA
1 AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGATTTAAAAAAGAACTAGTAA
2368 AAGTTTGACAAGTTCGG
66 AAGTTTGACAAGTTCGG
Statistics
Matches: 1580, Mismatches: 192, Indels: 62
0.86 0.10 0.03
Matches are distributed among these distances:
428 10 0.01
429 371 0.23
430 599 0.38
431 336 0.21
432 217 0.14
433 47 0.03
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (428 bp):
AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGATTTAAAAAAGAACTAGTAA
AAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
TTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAACGATGCGACTTC
CCGAGCATGTAATGTTCAGAAAATTGCTCGAAGTATTGTTCGACTTGAATACTTTAAGGAACCGA
AGCTATAAAAGAACTCATAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGACCAAGAGAGAAACA
ATTCTCACGTAAATAAGTTTATAATTCAAAGATCAAAACTTGTTTACAAAATGAAAACTATTTAG
ACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAA
Found at i:1567 original size:645 final size:646
Alignment explanation
Indices: 146--2383 Score: 2487
Period size: 646 Copynumber: 3.5 Consensus size: 646
136 TACAAAAAGA
* * * * ** *
146 AAAACAATTACTCGAAGGAATGGATCATCTTGAACACTTTAAGTAATCGGATTTAAAAAAGAACT
1 AAAA-AATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGCTATAAAAGAACT
* * * * * * * *
211 CGTAAAAGTTTGAGTAA-TTCGGAAGTTTGTCCAACAACCAAGAGAGAAACAATTCTCACATAAA
65 AGTAAAAGTTCGA-CAAGTTCGGAAGTTCGTCCAA-GACCAAGAGAGACACAATTCACACTTAAA
* * * * * *
275 TAAGTTTTTAATTCTAAGGCCAAAACTTATTTACAAAATGACGAAGTTTTTAGACCAAACGATAC
128 TAAGTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAACGATGC
* * * * * * * * *
340 GACTTCCCGAGCATGTAAAGTTCAGAAAATTGCTTGATGTATTGTATCGACTTGACTACTTTATG
193 GACTTCCCGAGCATGGAATGTTCAGAAAATTACTCGAAGTAATGGATCGTCTTGACTACTTTAAG
* * * * * **
405 GAACCGAAGCTATAAAAGAACTCA-TAAAAGTTTGAGAAGTTC-AGATGTACGTCCAGGAACCAA
258 GAACTG-AGTTATAAAAGAACTCAGTAAAAGTTTGACAAGTTCGAGAAGTTCGTCCAACAACCAA
*
468 GAGAG-AA-AATTCTCACGTAAATAAGTTTATAATTCAAA--AATCAAAATATGTTTACAAAATG
322 GAGAGAAACAATTCTCACGTAAATAAGTTTATAATTCAAAGCAA--AAACT-TGTTTACAAAATG
** *
529 AAAAACTTTTTAGACCAAATGATATGATTTCCCTCGCATGAAATGTTCCGAATATTACTCGAAGG
384 AAAAACTTTTTAGACCAAATGATGCGATTTCCCTCGCATGAAATGTTCCGAAAATTACTCGAAGG
* * *
594 AATGGATCGTCTTGAACACTTTAAGGAATCGGATCTAAAAAAAAACTCGTAAAAGTTTGACAATT
449 AATGGATCGTCTTGAACACTTTAAGGAA-CCGATCTAAAAAAGAACTCATAAAAGTTTGACAATT
*
659 TTGTAAGTTCGTCCAACAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGG
513 TTGTAAGTTCATCCAACAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGG
724 CCAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAAT
578 CCAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAAT
789 GTTC
643 GTTC
** * * * * * *
793 AAAAAATTGGTTGAAAGATTAGTTCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
1 AAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGCTATAAAAGAACT-
*
858 A-TAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAGCAAGAGAGACACAATTCACACTTAAATA
65 AGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGACCAAGAGAGACACAATTCACACTTAAATA
* * ** *
922 AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAACTATTTACCCCAAATGATGCGA
130 AGTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAACGATGCGA
* ** * * *
986 TTTCCCTCGCATGGAATGCTC-GAAAAATTACTTGAAGGAATGGATCGTCTTGAAC-ACTTTAAG
195 CTTCCCGAGCATGGAATGTTCAG-AAAATTACTCGAAGTAATGGATCGTCTTG-ACTACTTTAAG
* * * *
1049 GAACTGGGTT-TAAAAAGAACT-AGCAAAAGTTTGACAAGTTCGA-AAGTTTGTCCACCAACCAA
258 GAACTGAGTTAT-AAAAGAACTCAGTAAAAGTTTGACAAGTTCGAGAAGTTCGTCCAACAACCAA
* * * * * * *
1111 GAGAGAAACAATTGTCATGTAAATAAGTTTTTAATTCAATGGCAAAAACTTGTTTACTAAATCAC
322 GAGAGAAACAATTCTCACGTAAATAAGTTTATAATTCAA-AGCAAAAACTTGTTTACAAAATGAA
* * * * * ** * * * * *
1176 AAACCTATTAGACGAAACGATGCGACTTCCCGAGCATGTAATGTTCGGAAAATTGCTCGAAGTAT
386 AAACTTTTTAGACCAAATGATGCGATTTCCCTCGCATGAAATGTTCCGAAAATTACTCGAAGGAA
** ** * * * * * * *
1241 TGTTTCAACTTGCATACTTTAAGGAACCGAAGCTATAAAAGAACTCATAAAAGTTCGACAAGTTC
451 TGGATCGTCTTGAACACTTTAAGGAACCG-ATCTAAAAAAGAACTCATAAAAGTTTGACAATTTT
* * ** * **
1306 GTAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTTGCGTAAATAAGTTTATAATTCAAAGATC
515 GTAAGTTCATCCAACAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCC
* * * * * ** *
1371 AAAA-TATGTTTACAAAATCAAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATGGAAT
580 AAAACT-TGTTTACAGAAT-GATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAAT
1435 GTTTC
643 G-TTC
* * **
1440 -AAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGATTTGA-AAAAGAACT
1 AAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGCT-ATAAAAGAACT
* * * * * * *
1503 AGTAAAAGTTTGACAAGATCGGAAGTACATCCAACGTCCAAGA-A-A-ATCAATTCTCACGTAAA
65 AGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAA-GACCAAGAGAGACA-CAATTCACACTTAAA
* *
1565 TAAGTTTTTAATTCAAAGGCCAAAACATATTTACAAAATGACAAACT-TTTAGACCAAACGATGC
128 TAAGTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAACGATGC
* * * * * * * *
1629 GACTTCCCGAGCATGTAACGTTCAGAAAATTGCTCGAAGTATTGTATCGGCTTGACTAATTTATG
193 GACTTCCCGAGCATGGAATGTTCAGAAAATTACTCGAAGTAATGGATCGTCTTGACTACTTTAAG
** * * * * * * *
1694 GAATCAAAGATATAAAAGAACTCAG-AAAAGTTCGACAAGTT-TAGAAGTTCATCCAATAATCGA
258 GAA-CTGAGTTATAAAAGAACTCAGTAAAAGTTTGACAAGTTCGAGAAGTTCGTCCAACAACCAA
* * *
1757 GAGAGAAACAATTCTCACGTAAATAAGTTTATAATTCAAAGAAGAAAACATGTTTACAAAATGAT
322 GAGAGAAACAATTCTCACGTAAATAAGTTTATAATTCAAAGCA-AAAACTTGTTTACAAAATGAA
* **
1822 AAACTTTTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTTTGAAAATTACTCGAAGGAA
386 AAACTTTTTAGACCAAATGATGCGATTTCCCTCGCATGAAATGTTCCGAAAATTACTCGAAGGAA
* *
1887 TGGATCGTCTTGAACACTTTAAGGAGCTTGATCTAAAAAAGAACTCATAAAAGTTTGACAATTTT
451 TGGATCGTCTTGAACACTTTAAGGAAC-CGATCTAAAAAAGAACTCATAAAAGTTTGACAATTTT
*
1952 G-AATGTTCATCCAACAACTAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGGC
515 GTAA-GTTCATCCAACAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGC
2016 CAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATG
579 CAAAACTTGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATG
2081 TTC
644 TTC
* * * *
2084 AAAAAATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTC
1 AAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGCTATAAAAGAACTA
** * *
2149 GTAAAAGTTCGACAAGTTCAAAAGTTCGTCCAAGAGCAAGAGAGACACATTTCACACTTAAATAA
66 GTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGACCAAGAGAGACACAATTCACACTTAAATAA
* ** * * * *
2214 TTTTTTAATTCAAAGATTAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGAT
131 GTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAACGATGCGAC
** *
2279 TTCCCTCGCATGGAATGTTC-GATAAATTACTCGAAGAAATGGATCGTCTTGAAC-ACTTTAAGG
196 TTCCCGAGCATGGAATGTTCAGA-AAATTACTCGAAGTAATGGATCGTCTTG-ACTACTTTAAGG
* *
2342 AACTGGGTTTAAAAAAGAACT-AGTAAAAGTTTGACAAGTTCG
259 AACTGAG-TTATAAAAGAACTCAGTAAAAGTTTGACAAGTTCG
2384 G
Statistics
Matches: 1288, Mismatches: 261, Indels: 83
0.79 0.16 0.05
Matches are distributed among these distances:
642 2 0.00
643 47 0.04
644 87 0.07
645 515 0.40
646 521 0.40
647 112 0.09
648 4 0.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.28
Consensus pattern (646 bp):
AAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGCTATAAAAGAACTA
GTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGACCAAGAGAGACACAATTCACACTTAAATAA
GTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAACGATGCGAC
TTCCCGAGCATGGAATGTTCAGAAAATTACTCGAAGTAATGGATCGTCTTGACTACTTTAAGGAA
CTGAGTTATAAAAGAACTCAGTAAAAGTTTGACAAGTTCGAGAAGTTCGTCCAACAACCAAGAGA
GAAACAATTCTCACGTAAATAAGTTTATAATTCAAAGCAAAAACTTGTTTACAAAATGAAAAACT
TTTTAGACCAAATGATGCGATTTCCCTCGCATGAAATGTTCCGAAAATTACTCGAAGGAATGGAT
CGTCTTGAACACTTTAAGGAACCGATCTAAAAAAGAACTCATAAAAGTTTGACAATTTTGTAAGT
TCATCCAACAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACT
TGTTTACAGAATGATAAACTTTTTAGACCAAATGATGCGACTTCCCGAGCATGTAATGTTC
Done.