genome.fa.s14443.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014443.1 Kokia drynarioides strain JFW-HI SEQ_129482, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  258263

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3224--3262	19	2.1	19	85	9	53	25	2	2	69	1.14
3860--3899	20	1.9	21	85	10	55	45	2	2	50	1.28
5980--6014	15	2.3	15	90	0	52	22	25	25	25	2.00
5985--6057	38	1.9	38	88	5	112	26	30	19	24	1.98
13923--13960	19	2.0	19	85	10	51	68	13	0	18	1.21
30788--30844	26	2.2	26	87	3	80	29	22	22	24	1.99
31643--31673	16	1.9	16	93	0	53	22	16	0	61	1.34
35134--35183	26	2.0	25	88	4	73	28	20	24	28	1.99
35138--35191	26	2.1	26	85	0	72	27	20	22	29	1.98
37845--37878	11	3.0	11	86	4	50	82	0	17	0	0.67
43134--43340	40	5.2	40	82	0	234	25	25	17	31	1.97
43134--43340	80	2.6	80	85	0	270	25	25	17	31	1.97
52856--52883	3	9.3	3	100	0	56	35	0	0	64	0.94
53325--53402	23	3.4	23	68	23	56	48	1	12	37	1.50
53408--53463	20	2.8	20	83	2	67	41	1	3	53	1.29
53562--53596	18	1.9	18	88	0	52	48	2	5	42	1.41
53289--53799	145	3.5	144	83	7	568	42	2	9	45	1.51
53705--53749	19	2.4	18	77	3	54	44	2	4	48	1.35
55319--55362	20	2.0	20	87	12	61	27	4	11	56	1.53
58199--58244	4	11.5	4	80	0	56	26	26	0	47	1.52
58200--58245	24	1.9	24	90	0	74	26	26	0	47	1.52
66870--67314	125	3.6	123	79	3	435	22	17	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66870--67308	42	10.5	42	80	1	434	22	17	21	37	1.94
67743--67770	3	9.3	3	100	0	56	35	0	0	64	0.94
68173--68687	147	3.5	148	82	7	568	41	3	10	44	1.56
68173--68687	148	3.5	147	80	8	532	41	3	10	44	1.56
93231--93263	16	1.9	18	88	11	52	48	3	0	48	1.17
93427--93479	27	2.0	26	81	3	61	37	32	7	22	1.82
93481--93562	33	2.5	33	84	6	94	25	3	25	45	1.70
96207--96278	37	1.9	37	94	0	126	31	13	4	50	1.61
100783--101096	156	2.0	157	99	0	621	34	18	8	39	1.81
102544--102628	40	2.1	40	86	2	116	36	18	27	17	1.94
102605--102758	41	3.8	41	87	0	220	30	22	31	16	1.95
102738--102779	21	2.0	21	95	0	75	26	23	30	19	1.98
102697--102820	62	2.0	63	88	3	189	29	22	30	17	1.97
102759--102951	41	4.7	40	84	5	226	32	20	29	18	1.96
102664--102861	103	1.9	103	90	2	317	28	22	31	17	1.97
102632--102896	144	1.8	144	88	1	406	30	21	31	17	1.96
108913--109178	43	6.2	43	83	2	259	26	17	25	30	1.97
108913--109178	86	3.1	86	81	3	286	26	17	25	30	1.97
112428--112455	3	9.3	3	100	0	56	32	32	0	35	1.58
112696--112727	11	2.9	11	95	0	55	18	40	6	34	1.76
116668--116696	14	2.0	15	93	6	51	3	41	0	55	1.17
122241--122300	30	2.0	30	100	0	120	40	10	23	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123515--123549	17	2.0	18	88	5	54	40	20	0	40	1.52
123931--123959	14	2.0	15	93	6	51	3	41	0	55	1.17
126744--126777	17	2.0	17	94	0	59	38	5	0	55	1.24
126845--126876	14	2.4	13	90	10	55	34	0	0	65	0.93
134456--134544	33	2.7	33	100	0	178	55	23	5	15	1.62
136844--136878	18	1.9	18	94	0	61	22	28	14	34	1.93
136864--136901	20	1.9	20	84	10	51	15	23	18	42	1.89
140056--140086	15	2.1	15	100	0	62	64	0	6	29	1.18
152294--152731	195	2.2	195	82	4	508	28	19	26	25	1.99
155125--155212	37	2.3	37	86	7	113	53	5	2	38	1.37
155749--155773	13	1.9	13	100	0	50	32	0	16	52	1.44
155994--156101	31	3.5	31	82	5	103	52	0	4	41	1.28
156725--156797	36	2.1	35	85	12	96	45	5	2	46	1.40
157171--157217	21	2.2	21	81	7	51	34	0	6	59	1.23
160123--160168	14	3.3	14	84	0	56	19	4	32	43	1.71
160396--160447	21	2.5	21	78	3	61	25	23	30	21	1.99
162459--162507	16	3.2	16	72	21	59	30	0	8	61	1.25
163168--163212	12	3.6	12	77	11	54	0	40	0	60	0.97
163158--163247	14	6.4	14	75	16	73	0	35	0	64	0.94
165040--165079	20	2.0	20	85	0	53	60	5	12	22	1.52
166960--167027	31	2.2	32	82	10	88	47	23	11	17	1.81
167600--167635	3	12.3	3	88	5	56	0	27	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176535--177127	154	3.8	154	91	4	868	21	24	25	28	1.99
176846--177246	160	2.4	163	84	5	488	20	24	26	27	1.99
178562--178612	24	2.1	25	85	3	68	56	7	9	25	1.58
178578--178628	24	2.1	24	89	7	77	60	5	7	25	1.47
181132--181195	12	5.3	12	76	0	65	73	14	3	9	1.20
181132--181208	24	3.3	23	76	5	73	70	16	3	9	1.29
183995--184026	2	16.0	2	100	0	64	50	0	0	50	1.00
185220--185271	27	1.9	27	84	7	70	1	28	3	65	1.21
187944--188012	36	1.9	36	86	13	99	62	1	2	33	1.19
187960--188103	9	15.4	9	66	13	51	61	1	4	32	1.26
188351--188403	20	2.8	18	80	5	61	22	1	7	67	1.25
188527--188560	17	2.0	17	88	11	52	47	5	5	41	1.52
189462--189498	19	1.9	19	94	0	65	43	24	5	27	1.76
190452--190527	32	2.4	32	86	4	100	50	18	2	28	1.61
198344--198388	15	2.9	16	83	9	58	33	22	8	35	1.85
198762--198786	11	2.3	11	100	0	50	76	0	8	16	1.02
202165--202290	26	4.9	26	77	4	130	29	14	20	35	1.92
204055--204103	15	3.3	15	83	13	57	48	2	4	44	1.33
210899--210928	14	2.1	14	93	0	51	36	3	0	60	1.14
215042--215075	14	2.4	14	95	0	59	55	5	0	38	1.24
215565--215639	21	3.4	22	74	23	68	66	4	2	26	1.22
215764--215788	12	2.1	12	100	0	50	16	8	16	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219315--219474	87	1.8	87	90	0	257	30	21	11	35	1.90
221364--221393	14	2.1	14	100	0	60	43	13	0	43	1.43
221607--221637	16	1.9	16	93	0	53	25	19	6	48	1.72
228146--228173	14	2.0	14	100	0	56	50	7	7	35	1.57
228520--228590	36	2.0	36	91	8	119	60	8	15	15	1.57
230019--230163	72	2.0	72	90	0	227	39	19	17	23	1.92
235267--235307	7	6.0	7	80	13	50	24	2	0	73	0.96
235267--235308	16	2.5	16	78	21	50	23	4	0	71	1.05
237932--238193	87	3.0	87	81	1	276	31	19	13	35	1.91
237968--238195	44	5.3	41	68	15	140	32	20	12	35	1.90
242421--242501	23	3.5	23	79	5	92	41	14	9	33	1.79
247517--247542	12	2.2	12	100	0	52	65	0	0	34	0.93
250397--250438	18	2.5	17	77	11	50	50	7	7	35	1.57
251855--251914	31	2.0	31	83	3	77	41	6	15	36	1.73

Tables:   1

The End!