Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014447.1 Kokia drynarioides strain JFW-HI SEQ_129486, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13540
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:9923 original size:12 final size:12

Alignment explanation


    Indices: 9903--9932  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       9893 TTTCATGTAT

                        
       9903 TAAAAAATTTTA
          1 TAAAAAATTTTA

                *       
       9915 TAAAGAATTTTA
          1 TAAAAAATTTTA

                  
       9927 TAAAAA
          1 TAAAAA

       9933 GAATTATTTT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37


Consensus pattern (12 bp):   
TAAAAAATTTTA
Done.