genome.fa.s14449.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014449.1 Kokia drynarioides strain JFW-HI SEQ_129488, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101079

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445--547	29	3.5	30	74	9	95	35	24	1	37	1.67
457--556	29	3.4	29	76	11	98	33	23	2	42	1.65
455--588	58	2.3	59	79	8	148	34	22	3	39	1.72
573--881	59	5.3	58	82	6	329	31	25	6	35	1.82
643--798	29	5.3	29	72	20	103	30	27	5	36	1.80
540--881	117	2.9	117	81	8	426	30	25	7	36	1.83
721--811	29	3.1	29	72	20	82	34	27	5	32	1.80
4359--4455	1	97.0	1	68	0	50	83	6	6	4	0.90
4361--4457	13	7.6	13	75	15	60	82	6	7	4	0.94
4388--4444	7	8.7	7	83	9	59	84	10	0	5	0.77
4381--4437	26	2.2	26	84	6	71	82	8	3	5	0.93
4361--4444	39	2.2	39	84	4	107	82	7	7	3	0.95
5366--5658	51	5.8	48	69	15	148	41	19	23	15	1.89
5366--5575	101	2.1	101	86	0	285	41	20	22	15	1.90
5366--5614	101	2.5	100	82	2	284	41	20	23	14	1.89
5419--5724	50	6.1	50	68	12	160	40	19	23	16	1.91
5427--5745	150	2.1	151	86	1	435	41	18	25	15	1.89
5868--6054	101	1.9	101	84	0	257	34	16	19	30	1.93
6299--7281	206	4.8	206	89	0	1367	36	18	22	22	1.95
9573--9697	29	4.3	29	75	10	105	31	25	4	39	1.74
9659--10028	59	6.2	58	73	11	286	30	27	6	36	1.82
9650--10019	118	3.1	118	77	7	417	30	26	6	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9851--9933	30	2.8	28	73	22	71	31	31	3	33	1.75
9984--10047	28	2.3	28	100	0	128	26	28	6	39	1.80
9749--10106	87	4.0	89	69	18	255	29	27	6	36	1.82
10016--10201	60	3.1	59	86	4	232	31	28	5	34	1.80
10120--10221	29	3.4	29	72	17	84	35	30	3	30	1.76
10461--10645	96	1.9	96	85	6	259	29	18	13	38	1.89
12503--12571	22	3.2	21	67	16	52	23	4	0	72	1.02
16791--16836	21	2.2	21	84	7	58	56	15	6	21	1.61
17227--17271	23	2.0	22	86	4	63	62	0	4	33	1.15
17744--17778	19	1.9	19	88	11	56	48	0	0	51	1.00
18474--18523	22	2.3	22	82	6	66	60	12	12	16	1.60
25775--25854	18	4.3	18	73	7	63	25	2	5	67	1.23
26541--26584	23	1.9	23	85	0	61	13	11	2	72	1.21
27536--27589	13	4.2	13	71	20	51	59	0	0	40	0.98
29918--29965	25	1.9	25	87	8	71	43	0	4	52	1.20
33331--33374	19	2.2	20	84	11	56	36	6	4	52	1.49
42697--42730	16	2.1	16	88	5	50	55	8	17	17	1.66
51585--51684	43	2.3	43	86	6	148	29	28	18	25	1.98
54897--54933	18	2.1	18	89	0	56	45	0	21	32	1.52
55069--55237	41	4.1	41	80	1	160	20	23	15	40	1.91
56764--56812	22	2.2	22	82	13	57	44	14	2	38	1.56
57181--57340	41	3.9	41	77	3	160	22	28	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66045--66087	15	2.8	16	79	10	54	39	6	16	37	1.75
76070--76161	40	2.3	40	98	0	175	48	17	10	22	1.78
77666--77823	30	5.2	29	71	15	88	26	11	8	53	1.64
78004--78045	22	1.9	21	81	18	50	57	2	4	35	1.33
78036--78103	26	2.7	26	77	6	68	58	4	5	30	1.41
78691--78735	23	1.9	24	86	4	65	20	57	4	17	1.56
100332--100364	7	4.7	7	100	0	66	15	30	27	27	1.96

Tables:   1

The End!