Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001445.1 Kokia drynarioides strain JFW-HI SEQ_112959, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2335
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37


Found at i:1910 original size:19 final size:19

Alignment explanation


    Indices: 1886--1924  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1876 CATAAGTGTG

                               
       1886 TCATAATAATATATATATA
          1 TCATAATAATATATATATA

                               
       1905 TCATAATAATATATATATA
          1 TCATAATAATATATATATA

             
       1924 T
          1 T

       1925 TGATGTAGAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44


Consensus pattern (19 bp):   
TCATAATAATATATATATA

Found at i:1918 original size:17 final size:16

Alignment explanation


    Indices: 1891--1922  Score: 55
    Period size: 17  Copynumber: 1.9  Consensus size: 16

       1881 GTGTGTCATA

                            
       1891 ATAATATATATATATC
          1 ATAATATATATATATC

                            
       1907 ATAATAATATATATAT
          1 ATAAT-ATATATATAT

       1923 ATTGATGTAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    5  0.33
  17   10  0.67

ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44


Consensus pattern (16 bp):   
ATAATATATATATATC
Done.