Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014450.1 Kokia drynarioides strain JFW-HI SEQ_129489, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6926
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.33


Found at i:1028 original size:16 final size:16

Alignment explanation


    Indices: 1003--1037  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        993 GAATAAAGTG

                          * 
       1003 TTTTTGAGACTTATCA
          1 TTTTTGAGACTTATAA

                 *          
       1019 TTTTTTAGACTTATAA
          1 TTTTTGAGACTTATAA

               
       1035 TTT
          1 TTT

       1038 GTAGGAGTAG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.26, C:0.09, G:0.09, T:0.57


Consensus pattern (16 bp):   
TTTTTGAGACTTATAA

Found at i:3069 original size:38 final size:39

Alignment explanation


    Indices: 2996--3069  Score: 105
    Period size: 38  Copynumber: 1.9  Consensus size: 39

       2986 ACAGGTCCTG

                   * *                  *          
       2996 CTATGTCGCTACATCGACCCCCTGAACGTAGAATCTAAC
          1 CTATGTCACAACATCGACCCCCTGAACGCAGAATCTAAC

                                 *              
       3035 CTATGTCACAACATCGA-CCCTTGAACGCAGAATCT
          1 CTATGTCACAACATCGACCCCCTGAACGCAGAATCT

       3070 TCACCAAGTG


Statistics
Matches: 31,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  38   16  0.52
  39   15  0.48

ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23


Consensus pattern (39 bp):   
CTATGTCACAACATCGACCCCCTGAACGCAGAATCTAAC
Done.