Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014452.1 Kokia drynarioides strain JFW-HI SEQ_129491, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3360
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35


Found at i:1315 original size:29 final size:29

Alignment explanation


    Indices: 1273--1340  Score: 82
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       1263 CACGAGCTAG

                 *   *      *     *      
       1273 ACACATGGGAGTGTGATAGGCCTTGTGTC
          1 ACACACGGGCGTGTGACAGGCCGTGTGTC

                              *          
       1302 ACACACGGGCGTGTGACATGCCGTGTGTC
          1 ACACACGGGCGTGTGACAGGCCGTGTGTC

               *      
       1331 ACAGACGGGC
          1 ACACACGGGC

       1341 TAGCACATGA


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  29   33  1.00

ACGTcount: A:0.21, C:0.24, G:0.35, T:0.21


Consensus pattern (29 bp):   
ACACACGGGCGTGTGACAGGCCGTGTGTC
Done.