Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014458.1 Kokia drynarioides strain JFW-HI SEQ_129497, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1920
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28

Warning! 18 characters in sequence are not A, C, G, or T


Found at i:526 original size:45 final size:45

Alignment explanation


    Indices: 462--598  Score: 193
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        452 GCATAGCTCA

                                                         
        462 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

                                   *                     
        507 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

             *   **        *  *  *     *        *        
        552 TTAAGGGAAGGATATTAGGCTGAGTTTAACGAGCCATCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

              
        597 TC
          1 TC

        599 TATTCCTCCA


Statistics
Matches: 81,  Mismatches: 11, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  45   81  1.00

ACGTcount: A:0.32, C:0.26, G:0.21, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATAC

Found at i:616 original size:21 final size:21

Alignment explanation


    Indices: 590--635  Score: 74
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        580 ACGAGCCATC

                       *         
        590 GCAATACTCTATTCCTCCAGG
          1 GCAATACTCTACTCCTCCAGG

                              *  
        611 GCAATACTCTACTCCTCCGGG
          1 GCAATACTCTACTCCTCCAGG

                
        632 GCAA
          1 GCAA

        636 ATGGACCCTA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.24, C:0.35, G:0.17, T:0.24


Consensus pattern (21 bp):   
GCAATACTCTACTCCTCCAGG
Done.