Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014462.1 Kokia drynarioides strain JFW-HI SEQ_129501, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5500
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.34

Warning! 399 characters in sequence are not A, C, G, or T


Found at i:4406 original size:3 final size:3

Alignment explanation


    Indices: 4398--4422  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

       4388 AGGTGAGGTT

                                             
       4398 TTA TTA TTA TTA TTA TTA TTA TTA T
          1 TTA TTA TTA TTA TTA TTA TTA TTA T

       4423 ACATCCTTAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTA

Done.