genome.fa.s14463.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014463.1 Kokia drynarioides strain JFW-HI SEQ_129502, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129719

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2093--2123	13	2.4	13	88	0	53	67	3	0	29	1.06
8229--8296	18	3.7	18	73	9	66	70	0	0	29	0.87
8662--8750	37	2.4	36	77	17	87	61	0	3	34	1.12
16734--16774	10	3.8	10	82	17	55	41	0	2	56	1.13
16714--16760	17	2.8	17	80	0	58	40	0	6	53	1.27
16728--16774	23	2.1	22	92	4	76	38	0	6	55	1.26
17437--17506	12	5.8	12	78	13	72	55	1	8	34	1.39
18618--18771	30	5.2	30	77	15	144	40	18	3	36	1.69
18617--18771	60	2.6	58	81	14	174	40	19	3	36	1.70
18781--18988	29	7.2	29	85	5	244	34	28	5	30	1.81
30200--30277	41	1.9	42	84	10	108	46	16	23	14	1.83
31180--32306	209	5.5	198	86	5	1507	35	18	23	22	1.96
31157--32306	407	2.8	408	90	2	1750	35	18	23	23	1.96
32586--32640	17	3.3	17	87	2	85	40	0	3	56	1.17
32586--32640	23	2.5	24	77	14	64	40	0	3	56	1.17
33291--33351	12	5.1	12	80	9	54	60	1	4	32	1.28
33315--33359	19	2.4	19	85	10	58	62	0	2	35	1.08
33329--33359	3	10.0	3	93	6	53	64	0	0	35	0.94
33574--33613	20	2.0	21	90	5	64	30	17	17	35	1.93
33662--33709	25	1.9	25	86	0	69	54	0	14	31	1.41
34525--34840	29	10.8	29	76	12	172	36	25	3	34	1.73
34701--34897	58	3.4	59	82	6	231	35	26	5	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34697--34912	88	2.5	86	83	6	265	36	26	5	31	1.80
34701--34894	29	6.7	29	79	3	201	35	25	5	32	1.80
36187--36235	22	2.2	22	82	7	55	28	2	12	57	1.46
40659--40742	39	2.2	39	93	0	141	35	21	16	26	1.94
40670--40764	39	2.4	39	89	0	136	35	21	20	23	1.96
47375--47545	39	4.4	39	81	1	207	38	19	17	25	1.93
47373--47545	79	2.2	78	88	1	247	38	19	17	24	1.93
52406--52635	51	4.5	51	85	5	279	28	23	15	32	1.95
59770--59814	17	2.6	17	82	0	54	20	20	13	46	1.83
60380--60425	24	1.9	24	82	8	58	76	0	19	4	0.96
62287--62394	39	2.8	39	89	0	162	37	21	15	25	1.93
66177--67042	432	2.0	432	95	0	1545	39	18	12	29	1.87
67075--67360	94	3.0	94	86	0	401	33	20	16	29	1.95
76473--76517	23	2.0	23	86	8	65	73	4	8	13	1.23
77407--77432	2	13.0	2	100	0	52	50	0	0	50	1.00
89985--90021	18	2.1	18	89	0	56	48	0	27	24	1.51
93341--94674	49	27.3	47	68	12	259	36	18	27	18	1.94
93331--94674	98	13.7	98	86	0	1812	36	17	27	18	1.94
100002--100196	30	6.5	30	78	10	152	35	21	3	38	1.71
100025--100128	29	3.6	29	87	5	131	38	21	1	38	1.64
108189--108223	17	2.1	17	100	0	70	34	11	28	25	1.91
110406--110458	24	2.2	24	86	0	70	54	3	7	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111045--111087	18	2.4	18	88	7	61	46	0	0	53	1.00
128865--128904	13	2.9	14	88	7	64	77	5	17	0	0.94
128865--128906	14	3.2	13	93	6	68	78	4	16	0	0.91
128888--128922	17	2.1	17	89	5	54	77	0	22	0	0.78
128865--128922	29	2.1	27	83	6	71	75	3	20	0	0.94
129691--129718	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!