genome.fa.s14471.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014471.1 Kokia drynarioides strain JFW-HI SEQ_129510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69893

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506--787	29	9.6	29	76	6	246	35	28	1	34	1.68
487--787	59	5.2	59	87	4	396	36	26	1	34	1.67
487--832	118	2.9	114	81	6	365	36	26	1	34	1.67
4057--4187	27	4.9	27	78	1	104	25	32	25	16	1.96
4232--4278	16	2.9	17	75	12	55	70	10	0	19	1.16
4294--4336	8	5.2	8	94	2	50	53	0	2	44	1.13
4301--4337	2	18.5	2	94	0	65	51	0	0	48	1.00
4548--4580	9	3.7	9	84	15	50	24	0	0	75	0.80
4611--4685	27	2.8	27	93	4	125	17	17	38	26	1.92
7651--7738	7	11.9	7	71	20	54	30	1	23	44	1.61
7651--7786	52	2.6	51	82	8	143	26	0	25	47	1.57
7820--7883	14	4.6	14	72	16	53	23	0	29	46	1.52
7806--7872	35	1.9	35	84	6	91	23	0	25	50	1.49
8300--8329	6	5.0	6	91	0	51	70	16	0	13	1.18
8287--8329	18	2.4	18	88	3	61	69	11	2	16	1.28
11932--11986	27	2.0	28	86	10	78	20	27	30	21	1.98
13337--13381	23	2.0	23	86	0	63	51	8	2	37	1.46
14233--14303	17	4.2	17	78	5	72	49	1	5	43	1.35
16148--16409	30	8.9	29	75	10	187	37	28	3	31	1.74
16179--16405	28	7.7	30	75	11	182	37	27	2	32	1.71
16148--16409	58	4.5	58	81	9	248	37	28	3	31	1.74
16392--16492	29	3.5	28	70	18	73	33	23	4	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16448--16510	29	2.2	29	88	8	94	33	33	9	23	1.87
28091--28413	115	2.8	115	92	0	522	34	17	24	24	1.96
28275--28897	201	3.1	201	88	1	861	33	18	24	23	1.97
29297--29367	17	4.2	17	78	5	72	49	1	5	43	1.35
31256--31570	29	10.7	30	70	18	173	33	27	6	32	1.82
31256--31560	59	5.2	58	77	8	253	34	26	5	33	1.81
31256--31555	117	2.6	117	81	7	306	35	26	6	32	1.81
31342--31590	59	4.2	59	80	8	215	34	26	6	32	1.81
32655--32724	6	11.5	6	79	8	79	40	2	1	55	1.23
32733--32776	19	2.3	19	84	4	52	61	6	2	29	1.34
33453--33482	16	1.9	16	93	6	53	46	0	3	50	1.18
34528--34950	29	14.5	29	74	13	336	33	28	4	33	1.77
34528--34862	59	5.7	59	82	8	332	34	28	2	34	1.73
34556--34954	117	3.4	117	80	9	304	33	28	4	33	1.77
34964--35025	28	2.2	28	88	5	90	33	25	11	29	1.91
35860--35929	6	11.5	6	79	8	79	40	2	1	55	1.23
35938--35981	19	2.3	19	84	4	52	61	6	2	29	1.34
36658--36687	16	1.9	16	93	6	53	46	0	3	50	1.18
37733--38155	29	14.5	29	74	13	336	33	28	4	33	1.77
37733--38067	59	5.7	59	82	8	332	34	28	2	34	1.73
37761--38159	117	3.4	117	80	9	304	33	28	4	33	1.77
38169--38230	28	2.2	28	88	5	90	33	25	11	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42457--42507	22	2.3	23	81	15	56	47	9	29	13	1.75
51494--51544	22	2.3	23	81	15	56	47	9	29	13	1.75
58939--59195	115	2.3	112	79	6	272	36	17	23	22	1.95
59086--59473	205	1.9	205	95	0	695	32	20	24	21	1.98
66837--67093	115	2.3	112	79	6	272	36	17	23	22	1.95
67739--67801	6	10.8	6	73	13	60	39	3	1	55	1.25
67739--67800	17	3.6	17	86	8	81	38	3	1	56	1.25
68890--69234	30	11.8	28	76	10	275	35	27	3	32	1.75
68921--69264	88	3.9	87	78	9	335	36	26	3	33	1.73
68890--69386	58	8.5	59	74	10	263	34	27	4	32	1.78

Tables:   1

The End!